Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   V6U68_RS08195 Genome accession   NZ_CP145866
Coordinates   1783967..1784752 (-) Length   261 a.a.
NCBI ID   WP_002884784.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS9     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1778967..1789752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U68_RS08175 (V6U68_08155) - 1779461..1780342 (-) 882 WP_148512881.1 glycosyltransferase family 2 protein -
  V6U68_RS08180 (V6U68_08160) - 1780346..1781554 (-) 1209 WP_410531613.1 glycosyltransferase -
  V6U68_RS08185 (V6U68_08165) - 1781726..1783165 (-) 1440 WP_073689520.1 6-phospho-beta-glucosidase -
  V6U68_RS08190 (V6U68_08170) - 1783351..1783902 (-) 552 WP_014634960.1 cysteine hydrolase family protein -
  V6U68_RS08195 (V6U68_08175) codY 1783967..1784752 (-) 786 WP_002884784.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  V6U68_RS08200 (V6U68_08180) - 1785019..1786233 (-) 1215 WP_004183315.1 pyridoxal phosphate-dependent aminotransferase -
  V6U68_RS08205 (V6U68_08185) - 1786597..1787049 (+) 453 WP_002891687.1 universal stress protein -
  V6U68_RS08210 (V6U68_08190) - 1787127..1787879 (-) 753 WP_004183318.1 hypothetical protein -
  V6U68_RS08215 (V6U68_08195) pflA 1787949..1788749 (-) 801 WP_021143691.1 pyruvate formate-lyase-activating protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28829.85 Da        Isoelectric Point: 4.3715

>NTDB_id=853876 V6U68_RS08195 WP_002884784.1 1783967..1784752(-) (codY) [Streptococcus salivarius strain KSS9]
MANLLAKTRKITSILQRSVDSLEGDLPYNNMAAQLADIIDCNAAIVNGGGALLGFAMKYKTNNDRVEEFFEAKQLPEEYT
RGISRVYDTQENIGIDSDLTIFPVESKDDFPDGLTTIAPIYGGGMRLGSFIIWRNDHDFVDEDLILVEIASTVVGLQLLN
LQTENLEETIRKQTAINMAINTLSYSEIKAVSAILNELDGLEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLNEGIYDKLKEYE

Nucleotide


Download         Length: 786 bp        

>NTDB_id=853876 V6U68_RS08195 WP_002884784.1 1783967..1784752(-) (codY) [Streptococcus salivarius strain KSS9]
ATGGCAAATTTGCTGGCTAAAACACGTAAAATTACATCTATCTTGCAACGCTCAGTAGACAGCTTGGAAGGAGATCTTCC
ATACAACAACATGGCTGCTCAATTGGCGGATATCATTGATTGTAACGCTGCTATCGTTAATGGTGGTGGTGCTCTCCTTG
GTTTTGCCATGAAGTACAAAACCAACAATGATCGAGTGGAAGAGTTTTTTGAAGCTAAACAACTTCCAGAAGAATACACA
CGTGGTATCAGCCGTGTTTATGATACTCAAGAAAACATTGGTATTGACAGTGACTTGACCATTTTCCCAGTGGAGTCAAA
AGATGACTTCCCAGATGGTTTGACTACAATTGCCCCTATCTATGGTGGTGGTATGCGTCTTGGTTCTTTCATCATTTGGC
GTAACGATCATGATTTTGTGGATGAAGATCTTATCTTGGTTGAGATAGCCTCTACGGTAGTTGGGTTGCAGTTGTTGAAC
CTTCAAACAGAGAACTTGGAAGAAACGATTCGTAAACAAACAGCTATTAACATGGCTATTAATACCTTGTCTTACTCAGA
AATCAAGGCAGTTTCAGCTATCTTGAACGAGTTGGACGGTTTGGAAGGTCGCTTGACAGCATCTGTTATCGCTGACCGTA
TTGGAATTACGCGTTCAGTTATCGTTAATGCCCTTCGTAAGTTGGAATCAGCTGGTATTATTGAGAGCCGTTCACTCGGT
ATGAAAGGGACTTATCTTAAAGTCCTTAACGAAGGTATCTACGACAAATTGAAAGAATACGAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(201-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

64.981

98.467

0.64
  codY Bacillus subtilis subsp. subtilis str. 168

53.036

94.636

0.502