Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   V6U66_RS08755 Genome accession   NZ_CP145864
Coordinates   1882073..1882858 (-) Length   261 a.a.
NCBI ID   WP_002884784.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS7     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1877073..1887858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U66_RS08730 (V6U66_08720) gatA 1877490..1878956 (-) 1467 WP_410534473.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  V6U66_RS08735 (V6U66_08725) gatC 1878956..1879258 (-) 303 WP_002884769.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  V6U66_RS08740 (V6U66_08730) - 1879398..1879838 (-) 441 Protein_1670 glycosyltransferase -
  V6U66_RS08745 (V6U66_08735) - 1879859..1881298 (-) 1440 WP_342982873.1 6-phospho-beta-glucosidase -
  V6U66_RS08750 (V6U66_08740) - 1881455..1882006 (-) 552 WP_004183314.1 cysteine hydrolase family protein -
  V6U66_RS08755 (V6U66_08745) codY 1882073..1882858 (-) 786 WP_002884784.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  V6U66_RS08760 (V6U66_08750) - 1883126..1884340 (-) 1215 WP_013991094.1 pyridoxal phosphate-dependent aminotransferase -
  V6U66_RS08765 (V6U66_08755) - 1884700..1885152 (+) 453 WP_002891687.1 universal stress protein -
  V6U66_RS08770 (V6U66_08760) - 1885234..1885986 (-) 753 WP_013991095.1 hypothetical protein -
  V6U66_RS08775 (V6U66_08765) pflA 1886056..1886856 (-) 801 WP_410534474.1 pyruvate formate-lyase-activating protein -
  V6U66_RS08780 (V6U66_08770) - 1887043..1887756 (-) 714 WP_118172069.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28829.85 Da        Isoelectric Point: 4.3715

>NTDB_id=853643 V6U66_RS08755 WP_002884784.1 1882073..1882858(-) (codY) [Streptococcus salivarius strain KSS7]
MANLLAKTRKITSILQRSVDSLEGDLPYNNMAAQLADIIDCNAAIVNGGGALLGFAMKYKTNNDRVEEFFEAKQLPEEYT
RGISRVYDTQENIGIDSDLTIFPVESKDDFPDGLTTIAPIYGGGMRLGSFIIWRNDHDFVDEDLILVEIASTVVGLQLLN
LQTENLEETIRKQTAINMAINTLSYSEIKAVSAILNELDGLEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLNEGIYDKLKEYE

Nucleotide


Download         Length: 786 bp        

>NTDB_id=853643 V6U66_RS08755 WP_002884784.1 1882073..1882858(-) (codY) [Streptococcus salivarius strain KSS7]
ATGGCAAATTTGCTGGCTAAAACACGTAAAATTACATCTATCTTGCAACGCTCAGTAGATAGCTTGGAAGGAGATCTTCC
ATACAACAACATGGCTGCTCAATTGGCGGATATCATTGATTGTAACGCTGCTATCGTTAATGGTGGTGGTGCTCTCCTTG
GTTTTGCCATGAAGTACAAAACCAACAATGATCGTGTAGAAGAGTTTTTTGAAGCTAAACAACTTCCAGAAGAATACACA
CGTGGAATCAGCCGTGTTTATGACACTCAAGAAAACATTGGTATTGACAGTGACTTGACCATTTTCCCTGTGGAATCAAA
AGATGACTTCCCAGATGGTTTGACTACAATTGCCCCTATCTATGGTGGTGGGATGCGTCTTGGTTCTTTCATCATTTGGC
GTAACGACCATGATTTTGTGGATGAAGATCTTATCTTGGTTGAGATTGCCTCTACGGTTGTTGGTTTGCAGTTGTTGAAC
CTTCAAACAGAGAACTTGGAAGAAACAATTCGTAAACAAACAGCTATCAACATGGCAATTAATACCTTGTCTTACTCAGA
AATCAAGGCAGTTTCAGCTATCTTGAATGAGTTGGACGGTTTGGAAGGCCGCTTGACAGCGTCTGTCATCGCTGACCGTA
TCGGAATTACCCGTTCAGTTATCGTTAATGCCCTTCGTAAGTTGGAATCAGCTGGTATTATTGAGAGCCGTTCACTCGGT
ATGAAAGGGACTTATCTTAAAGTCCTTAACGAAGGTATCTACGATAAATTGAAAGAATACGAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(201-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

64.981

98.467

0.64
  codY Bacillus subtilis subsp. subtilis str. 168

53.036

94.636

0.502