Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   V6U64_RS01975 Genome accession   NZ_CP145862
Coordinates   374017..374802 (+) Length   261 a.a.
NCBI ID   WP_002884784.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS4     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 369017..379802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U64_RS01950 (V6U64_01950) - 369095..369835 (+) 741 WP_064520562.1 LPXTG cell wall anchor domain-containing protein -
  V6U64_RS01955 (V6U64_01955) pflA 370022..370822 (+) 801 WP_021143691.1 pyruvate formate-lyase-activating protein -
  V6U64_RS01960 (V6U64_01960) - 370892..371668 (+) 777 WP_064520561.1 hypothetical protein -
  V6U64_RS01965 (V6U64_01965) - 371723..372175 (-) 453 WP_002891687.1 universal stress protein -
  V6U64_RS01970 (V6U64_01970) - 372535..373749 (+) 1215 WP_002884715.1 pyridoxal phosphate-dependent aminotransferase -
  V6U64_RS01975 (V6U64_01975) codY 374017..374802 (+) 786 WP_002884784.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  V6U64_RS01980 (V6U64_01980) - 374868..375419 (+) 552 WP_410536838.1 cysteine hydrolase family protein -
  V6U64_RS01985 (V6U64_01985) - 375576..377015 (+) 1440 WP_410536840.1 6-phospho-beta-glucosidase -
  V6U64_RS01990 (V6U64_01990) - 377210..378418 (+) 1209 WP_410539666.1 glycosyltransferase -
  V6U64_RS01995 (V6U64_01995) - 378422..379303 (+) 882 WP_410536842.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28829.85 Da        Isoelectric Point: 4.3715

>NTDB_id=853363 V6U64_RS01975 WP_002884784.1 374017..374802(+) (codY) [Streptococcus salivarius strain KSS4]
MANLLAKTRKITSILQRSVDSLEGDLPYNNMAAQLADIIDCNAAIVNGGGALLGFAMKYKTNNDRVEEFFEAKQLPEEYT
RGISRVYDTQENIGIDSDLTIFPVESKDDFPDGLTTIAPIYGGGMRLGSFIIWRNDHDFVDEDLILVEIASTVVGLQLLN
LQTENLEETIRKQTAINMAINTLSYSEIKAVSAILNELDGLEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLNEGIYDKLKEYE

Nucleotide


Download         Length: 786 bp        

>NTDB_id=853363 V6U64_RS01975 WP_002884784.1 374017..374802(+) (codY) [Streptococcus salivarius strain KSS4]
ATGGCAAATTTGCTGGCTAAAACACGTAAAATTACATCTATCTTGCAACGCTCAGTAGACAGCTTGGAAGGAGATCTTCC
ATACAACAATATGGCTGCTCAATTGGCAGATATCATTGATTGTAACGCTGCTATCGTTAATGGTGGTGGTGCTCTCCTTG
GTTTTGCCATGAAGTACAAAACCAACAATGATCGTGTAGAAGAGTTTTTTGAAGCCAAACAGCTTCCAGAAGAGTATACA
CGTGGTATCAGCCGTGTTTATGACACTCAAGAAAACATTGGTATTGACAGTGACTTGACCATTTTCCCTGTGGAATCAAA
AGACGACTTCCCAGATGGTTTGACTACAATTGCCCCTATCTATGGTGGTGGTATGCGTCTTGGTTCTTTCATCATTTGGC
GTAACGATCATGACTTTGTAGATGAAGATCTTATCTTGGTTGAGATTGCCTCTACAGTAGTTGGGTTGCAGTTGTTGAAT
CTTCAAACAGAGAACTTGGAAGAAACAATTCGTAAACAGACAGCTATTAACATGGCTATTAATACCTTGTCTTACTCAGA
AATCAAGGCAGTTTCAGCTATCTTGAATGAGTTGGACGGTTTGGAAGGTCGCTTGACAGCGTCTGTTATCGCTGACCGTA
TCGGAATCACACGTTCAGTTATCGTTAATGCCCTTCGTAAGTTGGAATCAGCTGGTATTATTGAGAGCCGTTCACTCGGT
ATGAAAGGGACTTATCTTAAAGTCCTTAACGAAGGTATCTACGATAAATTGAAAGAATACGAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(201-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

64.981

98.467

0.64
  codY Bacillus subtilis subsp. subtilis str. 168

53.036

94.636

0.502