Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   V6U64_RS01890 Genome accession   NZ_CP145862
Coordinates   358007..358750 (+) Length   247 a.a.
NCBI ID   WP_048674802.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS4     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 353007..363750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U64_RS01870 (V6U64_01870) dinB 353518..354627 (+) 1110 WP_048674813.1 DNA polymerase IV -
  V6U64_RS01875 (V6U64_01875) - 354728..355618 (+) 891 WP_410536830.1 peptidase -
  V6U64_RS01880 (V6U64_01880) - 355834..356664 (+) 831 WP_048674808.1 transporter substrate-binding domain-containing protein -
  V6U64_RS01885 (V6U64_01885) - 357261..358007 (+) 747 WP_096832659.1 amino acid ABC transporter permease -
  V6U64_RS01890 (V6U64_01890) amiE 358007..358750 (+) 744 WP_048674802.1 amino acid ABC transporter ATP-binding protein Regulator
  V6U64_RS01895 (V6U64_01895) - 358962..359186 (+) 225 WP_002884393.1 DUF4059 family protein -
  V6U64_RS01900 (V6U64_01900) trxB 359252..360172 (+) 921 WP_002884706.1 thioredoxin-disulfide reductase -
  V6U64_RS01905 (V6U64_01905) rsmD 360320..360859 (+) 540 WP_410536833.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  V6U64_RS01910 (V6U64_01910) coaD 360892..361389 (+) 498 WP_410536835.1 pantetheine-phosphate adenylyltransferase -
  V6U64_RS01915 (V6U64_01915) sepM 361367..362443 (+) 1077 WP_288562432.1 SepM family pheromone-processing serine protease Regulator
  V6U64_RS01920 (V6U64_01920) - 362529..363473 (+) 945 WP_004183328.1 TIGR01212 family radical SAM protein -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27683.83 Da        Isoelectric Point: 6.5125

>NTDB_id=853361 V6U64_RS01890 WP_048674802.1 358007..358750(+) (amiE) [Streptococcus salivarius strain KSS4]
MISIKNLTKEFSGQKVLDGIDIDIKKGEVVALVGASGAGKSTILRSLNYLEQPDSGTITIDDFKVDFETITKEQILTLRR
KLAMVFQQFNLFERRTALDNVKEGLKIVKKLSDEEATKIAKEELAKVGLSNRENHYPRHLSGGQKQRVALARALAMKPDV
LLLDEPTSALDPELVGEVEKSIADAAKSGQTMILVSHDMNFVYQVADKVLFLEKGRILEQGTPDEIFNHPKEERTKEFFA
SYSKQYL

Nucleotide


Download         Length: 744 bp        

>NTDB_id=853361 V6U64_RS01890 WP_048674802.1 358007..358750(+) (amiE) [Streptococcus salivarius strain KSS4]
ATGATTAGTATCAAAAATTTGACCAAGGAATTTTCAGGTCAAAAGGTTCTCGATGGTATTGATATTGACATTAAAAAGGG
TGAAGTTGTGGCTCTTGTTGGTGCCTCTGGTGCAGGGAAATCAACAATTCTTCGCAGCTTAAACTATTTGGAACAACCTG
ATTCTGGTACTATTACCATTGATGATTTCAAGGTAGATTTCGAAACAATTACCAAAGAACAAATCCTTACTCTTCGTCGC
AAGTTGGCCATGGTTTTCCAACAGTTCAACCTCTTTGAACGTCGTACAGCCTTGGATAATGTTAAGGAAGGTCTTAAGAT
TGTTAAGAAACTTTCTGACGAAGAGGCTACTAAGATTGCGAAAGAAGAGCTTGCTAAGGTTGGGCTTTCTAATCGTGAAA
ATCACTACCCACGTCACTTGTCAGGTGGTCAAAAGCAACGTGTGGCCTTGGCCCGCGCCCTTGCAATGAAGCCTGATGTG
CTCTTGCTTGACGAACCAACATCTGCTCTTGACCCTGAGTTGGTTGGTGAGGTTGAAAAATCAATCGCTGATGCAGCTAA
GTCAGGTCAAACCATGATTTTGGTCAGTCACGACATGAACTTTGTTTATCAAGTGGCTGACAAGGTGCTCTTCCTTGAAA
AAGGTCGTATCCTTGAACAGGGAACACCTGACGAAATCTTTAACCATCCAAAAGAAGAACGAACAAAAGAATTTTTCGCT
TCTTATTCAAAACAATATCTTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

33.712

100

0.36