Detailed information NTG0853352

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: V6U64_RS01360
• Genome accession: NZ_CP145862
• Coordinates: 243099..245603 (-)
• Length: 834 a.a.
• NCBI ID: WP_410536755.1
• Uniprot ID: -
• Organism: Streptococcus salivarius strain KSS4
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 238099..250603

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V6U64_RS01330 (V6U64_01330)	-	239385..239615 (-)	231	WP_002884752.1	DNA-dependent RNA polymerase subunit epsilon	-
V6U64_RS01335 (V6U64_01335)	tsaB	239876..240562 (+)	687	WP_410536745.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
V6U64_RS01340 (V6U64_01340)	rimI	240522..240977 (+)	456	WP_410536747.1	ribosomal protein S18-alanine N-acetyltransferase	-
V6U64_RS01345 (V6U64_01345)	tsaD	240977..241990 (+)	1014	WP_410536749.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
V6U64_RS01350 (V6U64_01350)	-	242042..242734 (+)	693	WP_410536751.1	AzlC family ABC transporter permease	-
V6U64_RS01355 (V6U64_01355)	-	242721..243047 (+)	327	WP_410536753.1	AzlD domain-containing protein	-
V6U64_RS01360 (V6U64_01360)	recD/recD2/recDB	243099..245603 (-)	2505	WP_410536755.1	ATP-dependent RecD-like DNA helicase	Machinery gene
V6U64_RS01365 (V6U64_01365)	lepB	245664..246287 (-)	624	WP_060971708.1	signal peptidase I	-
V6U64_RS01370 (V6U64_01370)	rnhC	246306..247196 (-)	891	WP_410536757.1	ribonuclease HIII	-
V6U64_RS01375 (V6U64_01375)	zapA	247513..247827 (+)	315	WP_004183554.1	cell division protein ZapA	-
V6U64_RS01380 (V6U64_01380)	-	247824..248366 (+)	543	WP_410536759.1	CvpA family protein	-

Sequence

Protein

• Length: 834 a.a.
• Molecular weight: 93662.96 Da
• Isoelectric Point: 4.4476

>NTDB_id=853352 V6U64_RS01360 WP_410536755.1 243099..245603(-) (recD/recD2/recDB) [Streptococcus salivarius strain KSS4]
MQEFYFSGTIERVIFENASNFFRILLLEIDETDSDFEDYEIIVTGTMGDVMEGEDYTFWGQLTNHPKYGEQLQMTRYERS
KPSASGLIKYFASDNFKGIGKKTAERIVEIYGEDPIDKILEDPSELEQIPNLSKVNREAFVAKLKINYGAEQILSKLSSY
GLTPKAASQIFNQYKEESLNLIEEHPYLLVEEIQGIGFKMADQLAERLGIASDAPERLRAALIHCLLEASMEEGDTYIEA
KALLERTIILLEGARPIELDPALVANQLTNLIQEDKVQNVETKIFDNTLYFAEQGIYTHLTRIMKDQPDVSSEDKILDSL
EGVEEELGITYDQVQKDAIIKALQSKVFILTGGPGTGKTTVINGIIKTYADLHGLDLKKSDLPIILAAPTGRAARRMNEL
TQIPSATIHRHLGLNSEDDFKTLEDYLDCDLIIIDEFSMVDTWLANQLFESISDSTQVIIVGDQDQLPSVGPGQVLADLL
QINNLPKVSLTKIFRQSEDSTIVTLASQMRQGQLPADFTEKKADRSYFEAKANHIPQMVPKIVSAAIKSGIAAQDVQILA
PMYRGQAGINNLNTIMQDLLNPQEKANQFAFNDIFFRKNDKILHLVNDTELNVFNGDIGIITDLIPGKYTESKQDEIYMS
FDGNEVIYPRNEWNKIALAYAMSIHKSQGSEFPVVILPITRQSGRMLQRNLIYTAITRAKSKLVMLGEIAAFDYAIHNEG
AKRNTYLIQRFEQTYTQAVDKSVEKIVKNEATDASNQTKKENNGSSEPLENKDISGNLNPSPALINTYSQPVDKSVNKPV
QTEENYRLTEDNWATIDPMIGLSEDDIAAFFNNN

Nucleotide

• Length: 2505 bp

>NTDB_id=853352 V6U64_RS01360 WP_410536755.1 243099..245603(-) (recD/recD2/recDB) [Streptococcus salivarius strain KSS4]
ATGCAAGAATTTTATTTTTCAGGAACTATCGAACGCGTCATTTTCGAAAACGCTAGTAATTTTTTTCGTATCTTACTCTT
AGAGATTGACGAAACGGACAGTGATTTTGAAGACTACGAAATCATTGTCACAGGAACTATGGGGGATGTCATGGAGGGTG
AGGACTATACCTTCTGGGGCCAACTAACCAATCACCCTAAATATGGGGAACAGCTACAAATGACCCGCTACGAGCGTTCA
AAACCTTCTGCCAGCGGTCTTATCAAATATTTTGCCAGCGACAATTTCAAAGGAATCGGTAAGAAAACGGCCGAGCGTAT
TGTCGAAATTTACGGAGAAGACCCTATTGACAAGATTCTCGAGGATCCTAGCGAGTTAGAGCAAATCCCCAACCTCTCCA
AGGTCAATCGAGAAGCCTTTGTTGCTAAGTTAAAAATCAATTATGGAGCCGAGCAAATCCTGTCCAAACTTTCTAGCTAC
GGACTCACACCAAAGGCCGCCTCACAAATTTTCAACCAATATAAGGAAGAGTCACTAAATCTTATTGAGGAACACCCCTA
TCTATTAGTAGAGGAGATTCAAGGAATCGGTTTTAAAATGGCTGACCAACTAGCTGAACGTCTTGGAATTGCTAGTGATG
CTCCTGAGCGTTTACGAGCTGCCTTGATTCATTGTCTACTAGAAGCCAGTATGGAAGAAGGCGACACTTACATAGAAGCC
AAAGCCTTGCTTGAACGGACCATCATTCTTTTGGAAGGTGCTCGTCCGATTGAACTTGACCCCGCCTTGGTCGCTAACCA
ATTAACTAATCTTATCCAAGAGGATAAGGTGCAAAATGTAGAGACTAAAATCTTTGATAATACCCTATATTTTGCGGAAC
AGGGCATCTATACCCACCTAACTCGTATCATGAAGGACCAACCTGACGTCAGCTCTGAAGACAAAATCTTAGACAGCCTT
GAAGGAGTGGAAGAGGAGCTTGGTATTACTTATGATCAGGTTCAAAAAGATGCCATTATCAAAGCCCTACAAAGCAAGGT
CTTCATCCTGACAGGTGGTCCCGGAACAGGGAAAACCACTGTTATTAACGGCATTATTAAAACCTATGCTGACCTTCATG
GCCTCGATCTCAAAAAGTCTGATTTACCTATTATTTTAGCAGCACCAACGGGACGGGCTGCTCGTCGGATGAACGAACTC
ACCCAAATCCCTAGCGCCACTATTCATAGACATTTGGGCCTCAATAGCGAGGACGATTTTAAGACCTTAGAGGACTATCT
CGATTGCGATTTGATTATCATCGATGAGTTCTCTATGGTTGATACTTGGTTGGCCAATCAACTCTTTGAAAGTATCTCTG
ATTCAACCCAAGTTATCATTGTGGGTGACCAAGACCAACTACCTTCCGTAGGCCCTGGCCAAGTCTTGGCTGACCTTTTG
CAGATTAATAACTTGCCTAAGGTTTCCCTAACCAAAATTTTCAGACAATCCGAGGATTCCACTATCGTTACCCTAGCTAG
CCAAATGCGCCAAGGCCAACTACCCGCTGATTTCACAGAGAAAAAGGCTGACCGCTCTTACTTTGAGGCCAAGGCCAACC
ATATCCCACAGATGGTCCCTAAAATCGTCTCTGCTGCGATAAAGAGTGGGATTGCAGCTCAGGATGTTCAGATTCTAGCC
CCCATGTACCGAGGACAGGCCGGTATTAACAATCTCAATACCATTATGCAAGACCTACTTAATCCTCAAGAAAAGGCCAA
TCAGTTCGCCTTTAATGATATCTTCTTCCGCAAGAATGACAAGATTCTCCATCTGGTCAACGATACAGAACTCAATGTCT
TCAATGGCGACATCGGAATCATTACTGATCTCATCCCTGGTAAATATACTGAAAGCAAGCAGGACGAAATTTACATGTCC
TTCGACGGCAATGAGGTTATCTATCCTCGTAACGAATGGAATAAGATTGCTCTGGCCTATGCCATGTCAATCCACAAATC
CCAAGGGAGTGAGTTCCCAGTCGTTATCCTTCCCATCACACGCCAAAGTGGACGTATGCTACAACGTAACCTCATTTACA
CCGCAATCACACGTGCCAAGAGTAAACTGGTCATGCTAGGGGAAATCGCAGCCTTCGATTATGCTATTCACAACGAGGGG
GCTAAACGAAATACTTATCTCATCCAACGTTTTGAACAAACTTATACACAAGCTGTTGATAAGTCTGTCGAAAAGATTGT
TAAAAACGAGGCAACAGACGCATCCAATCAAACCAAAAAGGAAAACAACGGATCCTCAGAACCCCTTGAAAACAAAGACA
TTTCGGGAAATCTAAATCCATCTCCAGCTCTTATTAACACTTATTCACAGCCTGTGGATAAGTCTGTTAACAAACCTGTG
CAAACCGAAGAAAACTATCGTTTAACTGAAGATAATTGGGCCACTATAGATCCAATGATTGGTCTCAGTGAAGACGATAT
TGCTGCTTTTTTTAACAATAACTAA

Domains

Predicted by InterProScan.

• UvrD-like helicase C-terminal domain (UvrD_C_2) (659-705)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (572-638)

• AAA domain (AAA_30) (331-523)

• Helix-hairpin-helix containing domain (HHH_RecD2) (148-237)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	44.712	89.568	0.4