Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   V6U64_RS00415 Genome accession   NZ_CP145862
Coordinates   82628..83896 (+) Length   422 a.a.
NCBI ID   WP_410536698.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 77628..88896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U64_RS00390 (V6U64_00390) - 79188..80834 (-) 1647 WP_195187990.1 hypothetical protein -
  V6U64_RS00395 (V6U64_00395) - 81047..81352 (-) 306 WP_002887079.1 DUF1292 domain-containing protein -
  V6U64_RS00400 (V6U64_00400) ruvX 81458..81877 (-) 420 WP_022496180.1 Holliday junction resolvase RuvX -
  V6U64_RS00405 (V6U64_00405) - 81877..82143 (-) 267 WP_002885737.1 IreB family regulatory phosphoprotein -
  V6U64_RS00410 (V6U64_00410) rpmB 82270..82458 (-) 189 WP_002885786.1 50S ribosomal protein L28 -
  V6U64_RS00415 (V6U64_00415) rarA 82628..83896 (+) 1269 WP_410536698.1 replication-associated recombination protein A Machinery gene
  V6U64_RS00430 (V6U64_00430) - 84338..85477 (-) 1140 WP_003091984.1 tyrosine-type recombinase/integrase -
  V6U64_RS00435 (V6U64_00435) - 85479..85667 (-) 189 WP_000369785.1 DUF3173 domain-containing protein -
  V6U64_RS00440 (V6U64_00440) - 85679..86656 (-) 978 WP_410536700.1 replication initiation protein -
  V6U64_RS00445 (V6U64_00445) - 86702..86884 (-) 183 WP_041826713.1 hypothetical protein -
  V6U64_RS00450 (V6U64_00450) - 87104..87616 (+) 513 WP_003013606.1 helix-turn-helix domain-containing protein -
  V6U64_RS00455 (V6U64_00455) - 87839..88354 (+) 516 WP_003004261.1 HdeD family acid-resistance protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46616.04 Da        Isoelectric Point: 5.8803

>NTDB_id=853336 V6U64_RS00415 WP_410536698.1 82628..83896(+) (rarA) [Streptococcus salivarius strain KSS4]
MPDNLALRMRPRTISEVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
GVLEDKERGFDFDVQLDEDALDFIATATNGDLRSAYNSLDLAVMSTPASEDGFRHITLDTVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKVGFPEARILIANVV
VDLALSPKSNSAYMAMDAALADLRKSGNLPIPRHLRDGHYAGSKELGNAQDYKYPHAYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKERIDKLSR

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=853336 V6U64_RS00415 WP_410536698.1 82628..83896(+) (rarA) [Streptococcus salivarius strain KSS4]
ATGCCAGATAATCTTGCTCTACGCATGCGTCCACGTACAATTTCAGAGGTGATTGGTCAGAAGCATTTGGTTGGTGAAGG
TAAAATTATTCGCCGTATGGTAGAAGCGAATATGCTGTCGTCAATGATTCTCTACGGGCCACCAGGAATCGGGAAGACCT
CAATAGCTAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACCTTTAATGCTACTGTTGATAGCAAGAAACGCCTA
CAGGAAATTGCGGAAGAGGCTAAATTTTCAGGTGGCTTAGTTCTGCTTCTAGATGAGATTCATCGTTTGGATAAAGCTAA
ACAAGACTTTTTATTGCCACTCTTAGAGAATGGTAATATTATCATGATTGGGGCTACAACGGAGAATCCGTTTTTTTCTG
TCACACCAGCCATCCGTAGTCGTGTACAAATATTTGAGTTGGAACCACTCTCTAACGAGGATATTAAGGAAGCTATACTA
GGTGTTCTAGAGGACAAGGAGCGTGGCTTTGACTTTGATGTCCAGTTAGATGAGGATGCTCTAGATTTTATTGCTACGGC
TACTAATGGTGATTTACGTTCGGCTTATAATTCCTTAGATTTAGCTGTCATGTCGACGCCAGCTTCAGAAGATGGGTTTC
GCCATATTACTTTAGATACAGTGGAAAATAGTTTACAACGTAGCTATATCACCATGGATAAAGACGGTGATGGACACTAT
GATGTACTTTCTGCTTTGCAAAAATCTATTCGAGGCTCTGATGTTAATGCCAGTCTTCACTATGCAGCACGTTTGGTTGA
AGCAGGAGATCTCCCTAGTCTAGCACGACGCTTGACTGTGATTGCGTACGAGGATATTGGTTTAGCTAATCCTGATGCGC
AAGTTCACACGGTTACAGCTTTGGAAGCTGCACAGAAAGTAGGTTTCCCAGAGGCGCGTATTTTGATTGCCAATGTAGTT
GTTGACTTAGCTTTATCTCCTAAGTCGAATTCGGCTTATATGGCTATGGATGCTGCCTTGGCAGACCTTAGAAAATCAGG
GAATTTACCTATTCCTCGTCATTTGAGAGATGGACACTATGCTGGAAGCAAGGAACTGGGCAATGCACAAGATTACAAGT
ATCCCCATGCTTATCCTGAAAAGTGGGTCAAGCAACAATACCTTCCAGATAAATTAAGAGGTGTAAATTATTTCCAACCC
AATGAAACCGGGAAATATGAAAGAGCTCTTGGAGCTAATAAAGAACGGATTGATAAGTTATCTAGGTAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(173-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

60.143

99.289

0.597