Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   V6U63_RS08170 Genome accession   NZ_CP145861
Coordinates   1790976..1791719 (-) Length   247 a.a.
NCBI ID   WP_022495903.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS3     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1785976..1796719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U63_RS08140 (V6U63_08130) - 1786248..1787195 (-) 948 WP_272159208.1 TIGR01212 family radical SAM protein -
  V6U63_RS08145 (V6U63_08135) sepM 1787279..1788355 (-) 1077 WP_004183329.1 SepM family pheromone-processing serine protease Regulator
  V6U63_RS08150 (V6U63_08140) coaD 1788333..1788830 (-) 498 WP_022495906.1 pantetheine-phosphate adenylyltransferase -
  V6U63_RS08155 (V6U63_08145) rsmD 1788863..1789402 (-) 540 WP_022495905.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  V6U63_RS08160 (V6U63_08150) trxB 1789553..1790473 (-) 921 WP_002884706.1 thioredoxin-disulfide reductase -
  V6U63_RS08165 (V6U63_08155) - 1790539..1790763 (-) 225 WP_022495904.1 DUF4059 family protein -
  V6U63_RS08170 (V6U63_08160) amiE 1790976..1791719 (-) 744 WP_022495903.1 amino acid ABC transporter ATP-binding protein Regulator
  V6U63_RS08175 (V6U63_08165) - 1791719..1792465 (-) 747 WP_118189357.1 amino acid ABC transporter permease -
  V6U63_RS08180 (V6U63_08170) - 1793063..1793893 (-) 831 WP_014634974.1 transporter substrate-binding domain-containing protein -
  V6U63_RS08185 (V6U63_08175) - 1794108..1794998 (-) 891 WP_014634975.1 hypothetical protein -
  V6U63_RS08190 (V6U63_08180) dinB 1795099..1796208 (-) 1110 WP_014634976.1 DNA polymerase IV -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27696.87 Da        Isoelectric Point: 7.4642

>NTDB_id=853304 V6U63_RS08170 WP_022495903.1 1790976..1791719(-) (amiE) [Streptococcus salivarius strain KSS3]
MISIKNLTKEFSGQKVLDGINFDIKKGEVVALVGASGAGKSTILRSLNYLEQPDSGTITIDDFKVDFKTITKEQILTLRR
KLAMVFQQFNLFERRTALDNVKEGLKIVKKLSDEEATKIAKEELAKVGLSNRENHYPRHLSGGQKQRVALARALAMKPDV
LLLDEPTSALDPELVGEVEKSIADAAKSGQTMILVSHDMNFVYQVADKVLFLEKGHILEQGTPDEIFNHPKEERTKEFFA
SYSKQYL

Nucleotide


Download         Length: 744 bp        

>NTDB_id=853304 V6U63_RS08170 WP_022495903.1 1790976..1791719(-) (amiE) [Streptococcus salivarius strain KSS3]
ATGATTAGCATCAAAAATTTGACCAAGGAATTTTCAGGCCAAAAGGTTCTTGATGGCATTAACTTCGATATTAAAAAAGG
TGAAGTTGTAGCGCTTGTCGGTGCCTCTGGTGCAGGTAAGTCAACTATCCTTCGTAGCTTGAACTATTTGGAACAACCTG
ATTCTGGCACTATTACCATTGATGATTTTAAAGTAGACTTCAAGACTATCACTAAAGAACAAATTCTTACGCTTCGCCGT
AAGTTGGCCATGGTTTTCCAACAGTTCAACCTCTTTGAACGTCGTACAGCCTTGGATAATGTTAAGGAAGGTCTTAAGAT
TGTTAAGAAACTTTCTGACGAAGAAGCTACTAAGATTGCCAAAGAAGAGCTTGCTAAGGTTGGACTTTCAAATCGCGAAA
ATCACTACCCACGTCACTTGTCAGGTGGTCAAAAGCAACGTGTGGCCTTGGCCCGTGCCCTTGCTATGAAGCCAGATGTG
CTCTTGCTTGACGAACCAACATCTGCCCTTGACCCTGAGTTGGTTGGTGAGGTTGAAAAATCAATCGCTGATGCAGCTAA
GTCAGGTCAAACCATGATTTTGGTCAGTCACGACATGAACTTTGTTTATCAAGTGGCTGACAAGGTACTCTTCCTTGAAA
AAGGGCATATCCTTGAACAAGGAACACCTGATGAAATCTTTAACCATCCGAAAGAAGAACGAACAAAAGAATTTTTCGCT
TCTTATTCAAAACAATATCTTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

33.712

100

0.36