Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   V6U63_RS08075 Genome accession   NZ_CP145861
Coordinates   1773236..1774021 (-) Length   261 a.a.
NCBI ID   WP_002884784.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS3     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1768236..1779021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U63_RS08055 (V6U63_08045) - 1768735..1769616 (-) 882 WP_037611917.1 glycosyltransferase family 2 protein -
  V6U63_RS08060 (V6U63_08050) - 1769620..1770828 (-) 1209 WP_272159211.1 glycosyltransferase -
  V6U63_RS08065 (V6U63_08055) - 1771023..1772462 (-) 1440 WP_022496408.1 6-phospho-beta-glucosidase -
  V6U63_RS08070 (V6U63_08060) - 1772619..1773170 (-) 552 WP_037611919.1 cysteine hydrolase family protein -
  V6U63_RS08075 (V6U63_08065) codY 1773236..1774021 (-) 786 WP_002884784.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  V6U63_RS08080 (V6U63_08070) - 1774287..1775501 (-) 1215 WP_002884715.1 pyridoxal phosphate-dependent aminotransferase -
  V6U63_RS08085 (V6U63_08075) - 1775861..1776313 (+) 453 WP_002891687.1 universal stress protein -
  V6U63_RS08090 (V6U63_08080) - 1776392..1777144 (-) 753 WP_014634961.1 hypothetical protein -
  V6U63_RS08095 (V6U63_08085) pflA 1777214..1778014 (-) 801 WP_021143691.1 pyruvate formate-lyase-activating protein -
  V6U63_RS08100 (V6U63_08090) - 1778201..1778941 (-) 741 WP_272159210.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28829.85 Da        Isoelectric Point: 4.3715

>NTDB_id=853302 V6U63_RS08075 WP_002884784.1 1773236..1774021(-) (codY) [Streptococcus salivarius strain KSS3]
MANLLAKTRKITSILQRSVDSLEGDLPYNNMAAQLADIIDCNAAIVNGGGALLGFAMKYKTNNDRVEEFFEAKQLPEEYT
RGISRVYDTQENIGIDSDLTIFPVESKDDFPDGLTTIAPIYGGGMRLGSFIIWRNDHDFVDEDLILVEIASTVVGLQLLN
LQTENLEETIRKQTAINMAINTLSYSEIKAVSAILNELDGLEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLNEGIYDKLKEYE

Nucleotide


Download         Length: 786 bp        

>NTDB_id=853302 V6U63_RS08075 WP_002884784.1 1773236..1774021(-) (codY) [Streptococcus salivarius strain KSS3]
ATGGCAAATTTGCTGGCTAAAACACGTAAAATTACATCTATCTTGCAACGCTCAGTGGATAGCTTGGAAGGCGATCTTCC
ATATAACAACATGGCTGCTCAGTTAGCAGATATCATTGATTGTAATGCTGCTATCGTCAATGGTGGTGGTGCTCTCCTTG
GTTTTGCCATGAAATACAAAACCAACAATGACCGTGTAGAAGAGTTTTTTGAAGCTAAACAACTTCCAGAGGAATATACT
CGTGGTATTAGTCGTGTTTATGATACTCAAGAAAACATTGGTATTGACAGTGACTTGACCATTTTCCCAGTGGAATCAAA
AGATGATTTCCCAGACGGTTTGACTACAATTGCACCTATCTATGGTGGTGGTATGCGTCTCGGTTCTTTCATTATTTGGC
GTAACGACCATGATTTTGTGGATGAAGATCTTATCTTGGTTGAGATTGCCTCTACGGTTGTTGGTTTGCAGTTGTTGAAC
CTTCAAACAGAGAACTTGGAAGAAACAATTCGTAAACAAACAGCTATCAACATGGCAATTAATACCTTGTCTTACTCAGA
AATCAAGGCAGTTTCAGCTATCTTGAATGAGTTGGACGGTTTGGAAGGTCGCTTGACAGCGTCTGTTATCGCTGACCGTA
TCGGAATTACACGTTCAGTTATCGTTAATGCCCTTCGTAAGTTGGAATCAGCTGGTATTATTGAGAGCCGTTCACTCGGT
ATGAAAGGGACTTATCTTAAAGTCCTTAACGAAGGTATCTACGATAAATTGAAAGAATACGAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(201-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

64.981

98.467

0.64
  codY Bacillus subtilis subsp. subtilis str. 168

53.036

94.636

0.502