Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QYQ96_RS19110 Genome accession   NZ_CP129421
Coordinates   186693..187553 (-) Length   286 a.a.
NCBI ID   WP_369524490.1    Uniprot ID   -
Organism   Vibrio metoecus strain ZF102     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 181693..192553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYQ96_RS00875 (QYQ96_00875) gspL 181958..183169 (+) 1212 WP_055033471.1 type II secretion system protein GspL -
  QYQ96_RS00880 (QYQ96_00880) - 183179..183676 (+) 498 WP_000662889.1 type II secretion system protein M -
  QYQ96_RS00885 (QYQ96_00885) - 183678..184436 (+) 759 WP_055035123.1 type II secretion system protein N -
  QYQ96_RS00890 (QYQ96_00890) cysQ 184479..185306 (-) 828 WP_304572379.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  QYQ96_RS00895 (QYQ96_00895) nudE 185329..185877 (-) 549 WP_000095821.1 ADP compounds hydrolase NudE -
  QYQ96_RS00900 (QYQ96_00900) nfuA 186017..186604 (-) 588 WP_000070175.1 Fe-S biogenesis protein NfuA -
  QYQ96_RS19110 comF 186693..187553 (-) 861 WP_369524490.1 phosphoribosyltransferase family protein Machinery gene
  QYQ96_RS00915 (QYQ96_00915) bioH 187489..188250 (+) 762 WP_304572756.1 pimeloyl-ACP methyl ester esterase BioH -
  QYQ96_RS00920 (QYQ96_00920) - 188499..188969 (+) 471 WP_055027450.1 hypothetical protein -
  QYQ96_RS00925 (QYQ96_00925) - 189064..191385 (-) 2322 WP_000030095.1 Tex family protein -
  QYQ96_RS00930 (QYQ96_00930) greB 191628..192110 (+) 483 WP_000850492.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32610.56 Da        Isoelectric Point: 7.9352

>NTDB_id=853169 QYQ96_RS19110 WP_369524490.1 186693..187553(-) (comF) [Vibrio metoecus strain ZF102]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSISIFIHSTNWQDEANYPDSWLAMLTNWLRKTTAPLLTPECHLCRLALDQETP
FGICTACQSWLEHGYRCARCGLPTLTPVEQCGQCLGQPPPWRKLMCVGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLATQ
INEPAPLLCSVPLHWRRRWLRGFNQSDLLARELANVLNIEYDHQLFARRRATPHQQGLSKAQRIHNLRDAFVLNHPPNQP
HVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSHG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=853169 QYQ96_RS19110 WP_369524490.1 186693..187553(-) (comF) [Vibrio metoecus strain ZF102]
ATGCCCCAGCCGTGTACCAATACCAGATCTTGTCCTTGCCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
CTCTATTTCCATCTTCATCCACTCTACCAATTGGCAAGATGAAGCAAATTACCCTGATTCTTGGCTCGCTATGTTAACCA
ATTGGCTCAGAAAAACCACCGCACCACTGCTGACTCCGGAATGTCATCTCTGCCGACTGGCACTCGATCAAGAAACCCCG
TTTGGCATCTGCACCGCTTGCCAATCTTGGCTTGAGCACGGTTATCGCTGCGCACGCTGCGGTTTACCGACTCTCACTCC
TGTTGAACAGTGCGGGCAGTGTTTGGGTCAGCCTCCGCCGTGGCGAAAACTGATGTGTGTCGGCGATTACCGCTTTCCAC
TCAGTGATGCGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCCGCGCTTGGCTAAGCTACTCGCCACCCAG
ATTAACGAGCCAGCCCCGTTGCTGTGCAGTGTACCGCTGCATTGGCGGCGACGTTGGCTACGCGGCTTTAATCAAAGCGA
TCTGCTGGCGCGCGAGTTAGCCAATGTGCTGAACATTGAATATGACCACCAACTCTTTGCACGCCGCCGAGCCACACCGC
ATCAACAAGGACTCAGCAAGGCGCAGCGAATCCACAACCTACGTGATGCGTTTGTGCTGAATCATCCGCCAAACCAACCA
CATGTTGCGATTGTGGACGATGTGGTGACCACAGGCAGTACGATCCGACATTTATGCGATTTACTGCTTGATGTCGGTGT
GCAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCCACGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(189-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

95.455

100

0.955
  comF Vibrio campbellii strain DS40M4

46.639

83.217

0.388