Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   V6U62_RS01885 Genome accession   NZ_CP145860
Coordinates   356709..357452 (+) Length   247 a.a.
NCBI ID   WP_022495903.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 351709..362452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U62_RS01865 (V6U62_01855) dinB 352220..353329 (+) 1110 WP_014634976.1 DNA polymerase IV -
  V6U62_RS01870 (V6U62_01860) - 353430..354320 (+) 891 WP_014634975.1 hypothetical protein -
  V6U62_RS01875 (V6U62_01865) - 354535..355365 (+) 831 WP_014634974.1 transporter substrate-binding domain-containing protein -
  V6U62_RS01880 (V6U62_01870) - 355963..356709 (+) 747 WP_118189357.1 amino acid ABC transporter permease -
  V6U62_RS01885 (V6U62_01875) amiE 356709..357452 (+) 744 WP_022495903.1 amino acid ABC transporter ATP-binding protein Regulator
  V6U62_RS01890 (V6U62_01880) - 357665..357889 (+) 225 WP_022495904.1 DUF4059 family protein -
  V6U62_RS01895 (V6U62_01885) trxB 357955..358875 (+) 921 WP_002884706.1 thioredoxin-disulfide reductase -
  V6U62_RS01900 (V6U62_01890) rsmD 359017..359565 (+) 549 WP_231470873.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  V6U62_RS01905 (V6U62_01895) coaD 359598..360095 (+) 498 WP_022495906.1 pantetheine-phosphate adenylyltransferase -
  V6U62_RS01910 (V6U62_01900) sepM 360073..361149 (+) 1077 WP_004183329.1 SepM family pheromone-processing serine protease Regulator
  V6U62_RS01915 (V6U62_01905) - 361233..362180 (+) 948 WP_272159208.1 TIGR01212 family radical SAM protein -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27696.87 Da        Isoelectric Point: 7.4642

>NTDB_id=853144 V6U62_RS01885 WP_022495903.1 356709..357452(+) (amiE) [Streptococcus salivarius strain KSS2]
MISIKNLTKEFSGQKVLDGINFDIKKGEVVALVGASGAGKSTILRSLNYLEQPDSGTITIDDFKVDFKTITKEQILTLRR
KLAMVFQQFNLFERRTALDNVKEGLKIVKKLSDEEATKIAKEELAKVGLSNRENHYPRHLSGGQKQRVALARALAMKPDV
LLLDEPTSALDPELVGEVEKSIADAAKSGQTMILVSHDMNFVYQVADKVLFLEKGHILEQGTPDEIFNHPKEERTKEFFA
SYSKQYL

Nucleotide


Download         Length: 744 bp        

>NTDB_id=853144 V6U62_RS01885 WP_022495903.1 356709..357452(+) (amiE) [Streptococcus salivarius strain KSS2]
ATGATTAGCATCAAAAATTTGACCAAGGAATTTTCAGGCCAAAAGGTTCTTGATGGCATTAACTTCGATATTAAAAAAGG
TGAAGTTGTAGCGCTTGTCGGTGCCTCTGGTGCAGGTAAGTCAACTATCCTTCGTAGCTTGAACTATTTGGAACAACCTG
ATTCTGGCACTATTACCATTGATGATTTTAAAGTAGACTTCAAGACTATCACTAAAGAACAAATTCTTACGCTTCGCCGT
AAGTTGGCCATGGTTTTCCAACAGTTCAACCTCTTTGAACGTCGTACAGCCTTGGATAATGTTAAGGAAGGTCTTAAGAT
TGTTAAGAAACTTTCTGACGAAGAAGCTACTAAGATTGCCAAAGAAGAGCTTGCTAAGGTTGGACTTTCAAATCGCGAAA
ATCACTACCCACGTCACTTGTCAGGTGGTCAAAAGCAACGTGTGGCCTTGGCCCGTGCCCTTGCTATGAAGCCAGATGTG
CTCTTGCTTGACGAACCAACATCTGCCCTTGACCCTGAGTTGGTTGGTGAGGTTGAAAAATCAATCGCTGATGCAGCTAA
GTCAGGTCAAACCATGATTTTGGTCAGTCACGACATGAACTTTGTTTATCAAGTGGCTGACAAGGTACTCTTCCTTGAAA
AAGGGCATATCCTTGAACAAGGAACACCTGATGAAATCTTTAACCATCCGAAAGAAGAACGAACAAAAGAATTTTTCGCT
TCTTATTCAAAACAATATCTTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

33.712

100

0.36