Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   V6U62_RS00405 Genome accession   NZ_CP145860
Coordinates   82485..83753 (+) Length   422 a.a.
NCBI ID   WP_002885641.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 77485..88753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U62_RS00380 (V6U62_00380) - 79045..80691 (-) 1647 WP_195187990.1 hypothetical protein -
  V6U62_RS00385 (V6U62_00385) - 80904..81209 (-) 306 WP_002887079.1 DUF1292 domain-containing protein -
  V6U62_RS00390 (V6U62_00390) ruvX 81315..81734 (-) 420 WP_022496180.1 Holliday junction resolvase RuvX -
  V6U62_RS00395 (V6U62_00395) - 81734..82000 (-) 267 WP_002885737.1 IreB family regulatory phosphoprotein -
  V6U62_RS00400 (V6U62_00400) rpmB 82127..82315 (-) 189 WP_002885786.1 50S ribosomal protein L28 -
  V6U62_RS00405 (V6U62_00405) rarA 82485..83753 (+) 1269 WP_002885641.1 replication-associated recombination protein A Machinery gene
  V6U62_RS00420 (V6U62_00420) - 84195..85334 (-) 1140 WP_410535088.1 tyrosine-type recombinase/integrase -
  V6U62_RS00425 (V6U62_00425) - 85336..85524 (-) 189 WP_000369785.1 DUF3173 domain-containing protein -
  V6U62_RS00430 (V6U62_00430) - 85536..86513 (-) 978 WP_037601278.1 replication initiation protein -
  V6U62_RS00435 (V6U62_00435) - 86559..86741 (-) 183 WP_080702562.1 hypothetical protein -
  V6U62_RS00440 (V6U62_00440) - 86949..87461 (+) 513 WP_037601283.1 helix-turn-helix domain-containing protein -
  V6U62_RS00445 (V6U62_00445) - 87680..88195 (+) 516 WP_037601286.1 DUF308 domain-containing protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46582.02 Da        Isoelectric Point: 5.8803

>NTDB_id=853119 V6U62_RS00405 WP_002885641.1 82485..83753(+) (rarA) [Streptococcus salivarius strain KSS2]
MPDNLALRMRPRTISEVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
GVLEDKERGFDFDVQLDEDALDFIATATNGDLRSAYNSLDLAVMSTPASEDGLRHITLDTVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKVGFPEARILIANVV
VDLALSPKSNSAYMAMDAALADLRKSGNLPIPRHLRDGHYAGSKELGNAQDYKYPHAYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKERIDKLSR

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=853119 V6U62_RS00405 WP_002885641.1 82485..83753(+) (rarA) [Streptococcus salivarius strain KSS2]
ATGCCAGATAATCTTGCTCTACGCATGCGTCCACGTACAATTTCAGAGGTGATTGGTCAGAAGCATTTGGTTGGTGAAGG
TAAAATTATTCGCCGTATGGTAGAAGCGAATATGCTGTCGTCAATGATTCTCTACGGGCCACCAGGAATCGGGAAGACCT
CAATAGCTAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACCTTTAATGCTACTGTTGATAGCAAGAAACGCCTA
CAGGAAATTGCGGAAGAGGCTAAATTTTCAGGTGGCTTAGTTCTGCTTCTAGATGAGATTCATCGTTTGGATAAAGCTAA
ACAAGACTTTTTATTGCCACTCTTAGAGAATGGTAATATTATCATGATTGGGGCTACAACGGAGAATCCGTTTTTTTCTG
TCACACCAGCCATCCGTAGTCGTGTACAAATATTTGAGTTGGAACCACTCTCTAACGAGGATATTAAGGAAGCTATACTA
GGTGTTCTAGAGGACAAGGAGCGTGGCTTTGACTTTGATGTCCAGTTAGATGAGGATGCTCTAGATTTTATTGCTACGGC
TACTAATGGTGATTTACGTTCGGCTTATAATTCCTTAGATTTAGCTGTCATGTCGACGCCAGCTTCAGAAGATGGGCTTC
GCCATATTACTTTAGATACAGTGGAAAATAGTTTACAACGTAGCTATATCACCATGGATAAAGACGGTGATGGACACTAT
GATGTACTTTCTGCTTTGCAAAAATCTATTCGAGGCTCTGATGTTAATGCCAGTCTTCACTATGCAGCACGTTTGGTTGA
AGCAGGAGATCTCCCTAGTCTAGCACGACGCTTGACTGTGATTGCGTACGAGGATATTGGTTTAGCTAATCCTGATGCGC
AAGTTCACACGGTTACAGCTTTGGAAGCTGCACAGAAAGTAGGTTTCCCAGAGGCGCGTATTTTGATTGCCAATGTAGTT
GTTGACTTAGCTTTATCTCCTAAGTCGAATTCGGCTTATATGGCTATGGATGCTGCCTTGGCAGACCTTAGAAAATCAGG
GAATTTACCTATTCCTCGTCATTTGAGAGATGGACACTATGCTGGAAGCAAGGAACTGGGCAATGCACAAGATTACAAGT
ATCCCCATGCTTATCCTGAAAAGTGGGTCAAACAACAATATCTTCCGGATAAATTAAGAGGTGTGAATTATTTCCAACCC
AATGAAACCGGGAAATATGAAAGAGCTCTTGGAGCTAATAAAGAACGGATCGATAAGTTATCTAGGTAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

60.143

99.289

0.597