Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QYS50_RS04315 Genome accession   NZ_CP129415
Coordinates   886807..887367 (-) Length   186 a.a.
NCBI ID   WP_407570760.1    Uniprot ID   -
Organism   Deinococcus altitudinis strain LMG 24022     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 881807..892367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYS50_RS04275 (QYS50_04280) - 882078..882278 (-) 201 WP_407570752.1 hypothetical protein -
  QYS50_RS04280 (QYS50_04285) - 882348..882548 (-) 201 WP_407570753.1 hypothetical protein -
  QYS50_RS04285 (QYS50_04290) - 882774..883223 (-) 450 WP_407570754.1 hypothetical protein -
  QYS50_RS04290 (QYS50_04295) - 883349..883564 (+) 216 WP_407570755.1 helix-turn-helix domain-containing protein -
  QYS50_RS04295 (QYS50_04300) - 883561..883767 (+) 207 WP_407570756.1 hypothetical protein -
  QYS50_RS04300 (QYS50_04305) - 883951..884919 (-) 969 WP_407570757.1 hypothetical protein -
  QYS50_RS04305 (QYS50_04310) - 884995..885738 (-) 744 WP_407570758.1 hypothetical protein -
  QYS50_RS04310 (QYS50_04315) - 885777..886688 (-) 912 WP_407570759.1 TIGR04255 family protein -
  QYS50_RS04315 (QYS50_04320) comF 886807..887367 (-) 561 WP_407570760.1 ComF family protein Machinery gene
  QYS50_RS04320 (QYS50_04325) - 887409..887948 (-) 540 WP_407570761.1 hypothetical protein -
  QYS50_RS04325 (QYS50_04330) - 888111..889532 (+) 1422 WP_407570762.1 PLP-dependent aminotransferase family protein -
  QYS50_RS04330 (QYS50_04335) - 889547..889882 (-) 336 WP_407570763.1 hypothetical protein -
  QYS50_RS04335 (QYS50_04340) - 889939..891105 (-) 1167 WP_407570764.1 class I SAM-dependent rRNA methyltransferase -
  QYS50_RS04340 (QYS50_04345) - 891285..891821 (+) 537 WP_407570765.1 hypothetical protein -
  QYS50_RS04345 (QYS50_04350) - 891852..892331 (-) 480 WP_407570766.1 peroxiredoxin -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 19882.14 Da        Isoelectric Point: 11.3175

>NTDB_id=853113 QYS50_RS04315 WP_407570760.1 886807..887367(-) (comF) [Deinococcus altitudinis strain LMG 24022]
MVLRSVLNTLLPRRCPGCQGQLGSARGLCRACQSVLSPQLQSHSPLSPHAAPHLVVLGPYRGVLGRSVKALKYGNSREVA
QLLGTRLALGVPASWGVQAVTAVPLHPVRLRERGFNQAELLGRQVASGLAVPYLPALSRRRATGNQAKRHAKERLNALDD
AFVASSDLPETMLLIDDVMTTGAAQM

Nucleotide


Download         Length: 561 bp        

>NTDB_id=853113 QYS50_RS04315 WP_407570760.1 886807..887367(-) (comF) [Deinococcus altitudinis strain LMG 24022]
ATGGTGCTCCGGTCTGTTCTGAACACGCTGCTGCCGCGCCGCTGCCCCGGCTGCCAGGGCCAGCTCGGCTCGGCCCGTGG
CCTGTGCCGCGCCTGCCAGTCGGTTCTGAGCCCGCAGCTCCAGAGCCACTCGCCGCTTTCGCCGCACGCCGCGCCGCACC
TGGTGGTGCTGGGACCGTACCGGGGCGTGCTGGGCCGCTCGGTCAAGGCCCTGAAGTACGGCAACTCACGCGAGGTGGCG
CAGCTGCTGGGAACACGGCTGGCGCTGGGTGTGCCGGCCAGCTGGGGCGTGCAGGCGGTGACGGCCGTGCCGCTGCACCC
GGTCAGACTGCGCGAGCGCGGCTTCAATCAGGCCGAACTGCTCGGGCGTCAGGTGGCCTCGGGGCTGGCCGTTCCGTATC
TGCCCGCCCTGAGCCGCCGCCGGGCGACCGGAAACCAGGCCAAGCGCCATGCGAAGGAACGTCTGAATGCCCTCGACGAC
GCCTTCGTGGCGTCGTCGGACCTGCCGGAAACCATGCTGCTGATCGACGACGTGATGACCACCGGGGCCGCACAGATGTA
A

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(6-38)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.667

96.774

0.548
  comF Vibrio cholerae strain A1552

33.171

100

0.366