Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   V6T26_RS01920 Genome accession   NZ_CP145858
Coordinates   356927..357712 (+) Length   261 a.a.
NCBI ID   WP_002884784.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS11     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 351927..362712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T26_RS01895 (V6T26_01895) - 352008..352742 (+) 735 WP_410541338.1 LPXTG cell wall anchor domain-containing protein -
  V6T26_RS01900 (V6T26_01900) pflA 352929..353729 (+) 801 WP_002891689.1 pyruvate formate-lyase-activating protein -
  V6T26_RS01905 (V6T26_01905) - 353799..354551 (+) 753 WP_014634961.1 hypothetical protein -
  V6T26_RS01910 (V6T26_01910) - 354630..355082 (-) 453 WP_002891687.1 universal stress protein -
  V6T26_RS01915 (V6T26_01915) - 355446..356660 (+) 1215 WP_004183315.1 pyridoxal phosphate-dependent aminotransferase -
  V6T26_RS01920 (V6T26_01920) codY 356927..357712 (+) 786 WP_002884784.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  V6T26_RS01925 (V6T26_01925) - 357778..358329 (+) 552 WP_014634960.1 cysteine hydrolase family protein -
  V6T26_RS01930 (V6T26_01930) - 358521..359960 (+) 1440 WP_060972570.1 6-phospho-beta-glucosidase -
  V6T26_RS01935 (V6T26_01935) - 360179..361387 (+) 1209 WP_410541339.1 glycosyltransferase -
  V6T26_RS01940 (V6T26_01940) - 361391..362272 (+) 882 WP_014634957.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28829.85 Da        Isoelectric Point: 4.3715

>NTDB_id=853035 V6T26_RS01920 WP_002884784.1 356927..357712(+) (codY) [Streptococcus salivarius strain KSS11]
MANLLAKTRKITSILQRSVDSLEGDLPYNNMAAQLADIIDCNAAIVNGGGALLGFAMKYKTNNDRVEEFFEAKQLPEEYT
RGISRVYDTQENIGIDSDLTIFPVESKDDFPDGLTTIAPIYGGGMRLGSFIIWRNDHDFVDEDLILVEIASTVVGLQLLN
LQTENLEETIRKQTAINMAINTLSYSEIKAVSAILNELDGLEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLNEGIYDKLKEYE

Nucleotide


Download         Length: 786 bp        

>NTDB_id=853035 V6T26_RS01920 WP_002884784.1 356927..357712(+) (codY) [Streptococcus salivarius strain KSS11]
ATGGCAAATTTGCTGGCTAAAACACGTAAAATTACATCTATCTTGCAACGCTCAGTAGACAGCTTGGAAGGAGATCTTCC
ATACAACAACATGGCTGCTCAATTGGCGGATATCATTGATTGTAACGCTGCTATCGTTAATGGTGGTGGTGCTCTCCTTG
GTTTTGCCATGAAGTACAAAACCAACAATGATCGAGTGGAAGAGTTTTTTGAAGCTAAACAACTTCCAGAAGAGTACACA
CGTGGTATCAGCCGTGTTTATGATACTCAAGAAAACATTGGTATTGACAGTGACTTGACCATTTTCCCAGTGGAGTCAAA
AGATGACTTCCCAGATGGTTTGACTACAATTGCCCCTATCTATGGTGGTGGTATGCGTCTTGGTTCTTTCATCATTTGGC
GTAACGATCATGATTTTGTGGATGAAGATCTTATCTTGGTTGAGATAGCCTCTACGGTAGTTGGGTTGCAGTTGTTGAAC
CTTCAAACAGAGAACTTGGAAGAAACGATTCGTAAACAAACGGCTATTAACATGGCTATTAATACCTTGTCTTACTCAGA
AATCAAGGCAGTTTCAGCTATCTTGAACGAGTTGGACGGTTTGGAAGGTCGCTTGACAGCATCTGTTATCGCTGACCGTA
TCGGAATTACGCGTTCAGTTATCGTTAATGCCCTTCGTAAGTTGGAATCAGCTGGTATTATTGAGAGCCGTTCACTCGGT
ATGAAAGGGACTTATCTTAAAGTCCTTAACGAAGGTATCTACGACAAATTGAAAGAATACGAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(201-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

64.981

98.467

0.64
  codY Bacillus subtilis subsp. subtilis str. 168

53.036

94.636

0.502