Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   V6T26_RS00320 Genome accession   NZ_CP145858
Coordinates   60658..61926 (+) Length   422 a.a.
NCBI ID   WP_048790915.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 55658..66926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T26_RS00295 (V6T26_00295) - 57218..58864 (-) 1647 WP_048790914.1 membrane protein -
  V6T26_RS00300 (V6T26_00300) - 59077..59382 (-) 306 WP_002887079.1 DUF1292 domain-containing protein -
  V6T26_RS00305 (V6T26_00305) ruvX 59488..59907 (-) 420 WP_002887078.1 Holliday junction resolvase RuvX -
  V6T26_RS00310 (V6T26_00310) - 59907..60173 (-) 267 WP_002885737.1 IreB family regulatory phosphoprotein -
  V6T26_RS00315 (V6T26_00315) rpmB 60300..60488 (-) 189 WP_002885786.1 50S ribosomal protein L28 -
  V6T26_RS00320 (V6T26_00320) rarA 60658..61926 (+) 1269 WP_048790915.1 replication-associated recombination protein A Machinery gene
  V6T26_RS00335 (V6T26_00335) - 62368..63507 (-) 1140 WP_155213277.1 tyrosine-type recombinase/integrase -
  V6T26_RS00340 (V6T26_00340) - 63509..63697 (-) 189 WP_002903611.1 DUF3173 domain-containing protein -
  V6T26_RS00345 (V6T26_00345) - 63709..64686 (-) 978 WP_410541286.1 replication initiation protein -
  V6T26_RS00350 (V6T26_00350) - 64732..64914 (-) 183 WP_002901663.1 hypothetical protein -
  V6T26_RS00355 (V6T26_00355) - 65123..65635 (+) 513 WP_410541287.1 helix-turn-helix domain-containing protein -
  V6T26_RS00360 (V6T26_00360) - 65859..66374 (+) 516 WP_410541288.1 DUF308 domain-containing protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46600.06 Da        Isoelectric Point: 5.8803

>NTDB_id=853008 V6T26_RS00320 WP_048790915.1 60658..61926(+) (rarA) [Streptococcus salivarius strain KSS11]
MPDNLALRMRPRTISEVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVMLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
GVLEDKERGFDFDVQLDEDALDFIATATNGDLRSAYNSLDLAVMSTPASEDGLRHITLDTVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKVGFPEARILIANVV
VDLALSPKSNSAYMAMDAALADLRKSGNLPIPRHLRDGHYAGSKELGNAQDYKYPHAYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKERIDKLSR

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=853008 V6T26_RS00320 WP_048790915.1 60658..61926(+) (rarA) [Streptococcus salivarius strain KSS11]
ATGCCAGATAATCTTGCTCTACGCATGCGTCCACGTACAATTTCAGAGGTGATTGGTCAGAAGCATTTGGTTGGTGAAGG
TAAAATTATTCGCCGTATGGTAGAAGCGAATATGCTGTCGTCAATGATTCTCTACGGACCACCAGGAATCGGGAAGACCT
CAATAGCTAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACCTTTAATGCTACTGTTGATAGCAAGAAACGCCTG
CAGGAAATTGCGGAAGAGGCTAAATTTTCAGGTGGCTTAGTTATGCTTCTAGACGAGATTCATCGTTTGGATAAAGCTAA
ACAAGACTTTTTATTGCCACTCTTAGAGAATGGCAATATTATCATGATTGGGGCTACAACGGAGAATCCGTTTTTTTCTG
TCACACCAGCCATCCGTAGTCGTGTACAAATATTTGAGTTGGAACCACTCTCTAACGAGGATATTAAGGAAGCTATCCTA
GGTGTTCTAGAGGACAAGGAGCGTGGCTTTGACTTTGATGTCCAGTTAGATGAGGATGCTCTAGATTTTATTGCTACGGC
TACTAATGGTGATTTACGTTCGGCTTATAATTCCTTAGATTTAGCTGTCATGTCGACACCAGCTTCAGAAGATGGGCTTC
GCCATATTACTTTAGATACAGTGGAAAATAGTTTACAACGTAGCTATATCACCATGGATAAAGACGGTGATGGACACTAT
GATGTGCTTTCTGCTTTGCAAAAATCTATTCGAGGCTCTGATGTTAATGCCAGTCTTCACTATGCAGCACGTTTGGTTGA
AGCAGGAGATCTCCCTAGTCTAGCACGGCGCTTGACTGTGATTGCGTACGAGGATATTGGTTTAGCTAATCCTGATGCGC
AAGTTCACACGGTTACAGCTTTGGAAGCTGCACAGAAAGTAGGTTTCCCAGAGGCGCGTATTTTGATTGCCAATGTAGTT
GTTGACTTAGCTTTATCTCCTAAGTCGAATTCGGCTTATATGGCTATGGATGCTGCCTTGGCAGACCTTAGAAAATCAGG
GAATTTACCTATTCCTCGTCATTTGAGAGATGGACACTATGCTGGAAGCAAGGAACTGGGCAATGCACAAGATTACAAGT
ATCCCCATGCTTATCCTGAAAAGTGGGTCAAGCAACAATACCTTCCAGATAAATTAAGAGGTGTAAATTATTTCCAACCC
AATGAAACCGGGAAATATGAAAGAGCTCTTGGAGCTAATAAAGAACGGATTGATAAGTTATCTAGGTAA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.905

99.289

0.595