Detailed information NTG0852986

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: V6T01_RS08965
• Genome accession: NZ_CP145856
• Coordinates: 1942681..1945185 (+)
• Length: 834 a.a.
• NCBI ID: WP_410541305.1
• Uniprot ID: -
• Organism: Streptococcus salivarius strain KSS1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1937681..1950185

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V6T01_RS08945 (V6T01_08920)	-	1939918..1940460 (-)	543	WP_410541306.1	CvpA family protein	-
V6T01_RS08950 (V6T01_08925)	zapA	1940457..1940771 (-)	315	WP_004183554.1	cell division protein ZapA	-
V6T01_RS08955 (V6T01_08930)	rnhC	1941088..1941978 (+)	891	WP_060972421.1	ribonuclease HIII	-
V6T01_RS08960 (V6T01_08935)	lepB	1941997..1942620 (+)	624	WP_013991198.1	signal peptidase I	-
V6T01_RS08965 (V6T01_08940)	recD/recD2/recDB	1942681..1945185 (+)	2505	WP_410541305.1	ATP-dependent RecD-like DNA helicase	Machinery gene
V6T01_RS08970 (V6T01_08945)	-	1945237..1945563 (-)	327	WP_410541304.1	AzlD domain-containing protein	-
V6T01_RS08975 (V6T01_08950)	-	1945550..1946242 (-)	693	WP_037598483.1	AzlC family ABC transporter permease	-
V6T01_RS08980 (V6T01_08955)	tsaD	1946294..1947307 (-)	1014	WP_037599075.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
V6T01_RS08985 (V6T01_08960)	rimI	1947307..1947762 (-)	456	WP_037605671.1	ribosomal protein S18-alanine N-acetyltransferase	-
V6T01_RS08990 (V6T01_08965)	tsaB	1947722..1948408 (-)	687	WP_410541303.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
V6T01_RS08995 (V6T01_08970)	-	1948669..1948899 (+)	231	WP_002884752.1	DNA-dependent RNA polymerase subunit epsilon	-

Sequence

Protein

• Length: 834 a.a.
• Molecular weight: 93714.95 Da
• Isoelectric Point: 4.4341

>NTDB_id=852986 V6T01_RS08965 WP_410541305.1 1942681..1945185(+) (recD/recD2/recDB) [Streptococcus salivarius strain KSS1]
MQEFYFSGTIERVIFENTSNFFRILLLEIDETDSDFEDYEIIVTGTMGDVMEGEDYTFWGQLTNHPKYGEQLQMTRYERS
KPSASGLIKYFASDNFKGIGKKTAERIVEIYGEDPIDKILEDPSELEQIPNLSKVNREAFVAKLKINYGAEQILSKLSSY
GLTPKAASQIFNQYKEESLNLIEEHPYLLVEEIQGIGFKMADQLAERLGIASDAPERLRAALIHCLLEASMEEGDTYIEA
KALLERTIILLEGARPIELDPALVANQLTNLIQEDKVQNVETKIFDNTLYFAEQGIYTHLTRIMKDQPDVSSEDKILDSL
EGVEEELGITYDKVQKDAIIKALQSKVFILTGGPGTGKTTVINGIIKTYADLHGLDLKKSDLPIILAAPTGRAARRMNEL
TQLPSATIHRHLGLNSEDDFKTLEDYLDCDLIIIDEFSMVDTWLANQLFESISDSTQVIIVGDQDQLPSVGPGQVLADLL
QIDNLPKVSLTKIFRQSEDSTIVTLASQMRQGQLPADFTEKKADRSYFEAKANHIPQMVPKIVSAAIKSGIAAQDVQILA
PMYRGQAGINNLNTIMQDLLNPQEKANQFAFNDIFFRKNDKILHLVNDTELNVFNGDIGVITDLIPGKYTESKQDEIYMS
FDGNEVIYPRNEWNKITLAYAMSIHKSQGSEFPVVILPITRQSGRMLQRNLIYTAITRAKSKLVMLGEIAAFDYAVHNEG
AKRNTYLIQRFEQTYTQAVDKSVEKIVTNEATDASNQTKKENNGSSEPLENKDISGNINPSPTLINTYSQPVDKSVNKPV
QTEENYRLTEDNWSTIDPMIGLSEDDIAAFFNNN

Nucleotide

• Length: 2505 bp

>NTDB_id=852986 V6T01_RS08965 WP_410541305.1 1942681..1945185(+) (recD/recD2/recDB) [Streptococcus salivarius strain KSS1]
ATGCAAGAATTTTATTTTTCAGGAACTATCGAACGCGTCATTTTCGAAAACACTAGTAATTTTTTTCGTATCTTACTCTT
AGAGATTGACGAAACGGACAGTGATTTTGAAGACTACGAAATCATTGTCACAGGAACTATGGGGGATGTCATGGAGGGTG
AAGACTATACCTTCTGGGGCCAACTAACCAATCACCCTAAATATGGGGAACAGCTACAAATGACCCGCTACGAGCGTTCA
AAACCTTCTGCCAGCGGTCTTATCAAATATTTTGCCAGCGACAATTTCAAAGGAATCGGTAAGAAAACGGCCGAGCGTAT
TGTCGAAATTTACGGAGAAGACCCTATTGACAAGATTCTCGAGGATCCTAGCGAGTTAGAGCAGATTCCCAACCTATCCA
AGGTCAATCGAGAAGCCTTTGTTGCTAAGTTAAAAATCAATTATGGAGCCGAGCAAATCCTGTCCAAACTTTCTAGCTAT
GGCCTCACACCAAAGGCCGCCTCACAAATTTTCAACCAATATAAGGAAGAGTCACTAAATCTTATTGAGGAACACCCTTA
TCTATTAGTAGAGGAGATTCAAGGAATCGGTTTTAAAATGGCCGACCAACTAGCTGAACGTCTTGGAATTGCTAGTGATG
CCCCTGAGCGTTTACGAGCAGCCTTGATTCATTGTCTACTAGAAGCCAGTATGGAAGAAGGCGATACCTACATAGAAGCC
AAAGCCTTGCTTGAACGGACCATCATTCTTTTGGAAGGTGCTCGTCCGATTGAACTTGACCCCGCCTTGGTCGCTAACCA
ATTAACCAATCTTATCCAAGAGGATAAGGTGCAAAATGTAGAGACTAAAATCTTTGATAATACCCTATATTTTGCGGAAC
AGGGCATCTATACCCACCTAACTCGTATCATGAAGGACCAACCTGACGTCAGCTCTGAAGACAAAATCTTAGACAGCCTT
GAAGGGGTGGAAGAGGAGCTTGGTATTACTTATGATAAGGTTCAAAAAGATGCCATTATCAAAGCCCTACAAAGTAAGGT
CTTCATCCTGACAGGTGGTCCCGGAACAGGGAAAACCACTGTTATTAACGGCATTATTAAAACCTATGCTGACCTTCATG
GCCTAGATCTCAAAAAGTCTGATTTACCTATTATTTTAGCAGCACCAACGGGACGGGCTGCTCGTCGGATGAACGAACTC
ACCCAACTCCCTAGCGCCACTATTCATAGACATTTAGGCCTCAATAGCGAGGACGATTTTAAGACCTTAGAGGACTATCT
CGATTGCGATTTGATTATCATCGATGAGTTCTCTATGGTTGATACTTGGTTGGCCAATCAACTCTTTGAAAGTATCTCTG
ATTCAACCCAAGTTATCATTGTGGGTGACCAAGACCAACTACCTTCCGTAGGCCCTGGCCAAGTCTTGGCTGACCTTTTG
CAGATTGATAACTTGCCTAAGGTTTCCCTAACCAAAATTTTCAGACAATCCGAGGATTCCACTATCGTTACCCTAGCTAG
CCAGATGCGCCAAGGCCAACTACCCGCTGATTTCACAGAGAAAAAGGCTGACCGCTCTTACTTTGAGGCCAAGGCCAACC
ATATTCCACAGATGGTTCCTAAAATCGTCTCTGCTGCGATAAAGAGTGGGATTGCAGCTCAGGATGTTCAGATTCTAGCC
CCCATGTACCGAGGACAGGCTGGTATTAACAATCTCAATACCATTATGCAAGACCTACTTAATCCCCAAGAAAAGGCCAA
TCAGTTCGCCTTTAATGATATCTTCTTCCGCAAGAACGACAAGATTCTCCATCTGGTCAACGATACAGAACTCAATGTCT
TCAATGGCGACATCGGAGTCATTACTGATCTCATTCCTGGTAAATATACTGAAAGCAAACAGGACGAAATTTACATGTCC
TTCGACGGCAATGAGGTTATCTATCCTCGTAACGAATGGAATAAGATTACTCTGGCCTATGCTATGTCAATCCACAAATC
CCAAGGGAGTGAGTTCCCAGTCGTTATCCTTCCCATCACACGCCAAAGTGGGCGTATGCTACAACGTAATCTCATTTACA
CCGCAATCACACGCGCCAAGAGTAAACTAGTCATGCTAGGGGAAATCGCAGCCTTCGATTATGCTGTTCACAACGAGGGG
GCTAAACGAAATACTTATCTCATCCAACGTTTTGAACAAACTTATACACAAGCTGTTGATAAGTCTGTCGAGAAGATTGT
TACAAACGAGGCAACAGACGCATCCAATCAAACCAAAAAGGAAAACAACGGATCCTCAGAACCCCTTGAAAACAAAGATA
TTTCGGGAAATATAAATCCATCTCCAACTCTTATTAACACTTATTCACAGCCTGTGGATAAGTCTGTTAACAAACCTGTG
CAAACCGAAGAAAACTATCGTTTAACGGAAGATAATTGGTCAACTATAGATCCAATGATTGGTCTCAGTGAAGACGATAT
TGCTGCCTTTTTTAACAACAACTAA

Domains

Predicted by InterProScan.

• UvrD-like helicase C-terminal domain (UvrD_C_2) (659-705)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (572-638)

• AAA domain (AAA_30) (331-523)

• Helix-hairpin-helix containing domain (HHH_RecD2) (148-237)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	45.114	89.568	0.404