Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   V6S25_RS04150 Genome accession   NZ_CP145714
Coordinates   321882..322646 (-) Length   254 a.a.
NCBI ID   WP_032254979.1    Uniprot ID   -
Organism   Escherichia coli strain S1-CAM-01-A     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 316882..327646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6S25_RS04140 (V6S25_04140) nikR 320672..321073 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  V6S25_RS04145 (V6S25_04145) nikE 321079..321885 (-) 807 WP_000173631.1 nickel import ATP-binding protein NikE -
  V6S25_RS04150 (V6S25_04150) amiE 321882..322646 (-) 765 WP_032254979.1 nickel import ATP-binding protein NikD Regulator
  V6S25_RS04155 (V6S25_04155) nikC 322646..323479 (-) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  V6S25_RS04160 (V6S25_04160) nikB 323476..324420 (-) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  V6S25_RS04165 (V6S25_04165) nikA 324420..325994 (-) 1575 WP_000953348.1 nickel ABC transporter substrate-binding protein -
  V6S25_RS04170 (V6S25_04170) acpT 326105..326692 (-) 588 WP_000285774.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26850.40 Da        Isoelectric Point: 6.3761

>NTDB_id=852734 V6S25_RS04150 WP_032254979.1 321882..322646(-) (amiE) [Escherichia coli strain S1-CAM-01-A]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCTATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSDGKIVEQGDVETLFNAPKHTVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=852734 V6S25_RS04150 WP_032254979.1 321882..322646(-) (amiE) [Escherichia coli strain S1-CAM-01-A]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTACACGGTGTATCGTTAACCCTGCA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCACCGCGACGCTGGGCATTTTGC
CCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCT
GGCGTTAGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCTGACGGTAAGATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATACAGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398