Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QUD91_RS18750 Genome accession   NZ_AP027256
Coordinates   3785747..3786214 (+) Length   155 a.a.
NCBI ID   WP_000340167.1    Uniprot ID   A7ZSL1
Organism   Escherichia coli strain JNE141411     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3780747..3791214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUD91_RS18705 (JNE141411_35540) rplP 3780857..3781267 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  QUD91_RS18710 (JNE141411_35550) rpsC 3781280..3781981 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  QUD91_RS18715 (JNE141411_35560) rplV 3781999..3782331 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  QUD91_RS18720 (JNE141411_35570) rpsS 3782346..3782624 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  QUD91_RS18725 (JNE141411_35580) rplB 3782641..3783462 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  QUD91_RS18730 (JNE141411_35590) rplW 3783480..3783782 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  QUD91_RS18735 (JNE141411_35600) rplD 3783779..3784384 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  QUD91_RS18740 (JNE141411_35610) rplC 3784395..3785024 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  QUD91_RS18745 (JNE141411_35620) rpsJ 3785057..3785368 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  QUD91_RS18750 (JNE141411_35630) pilD 3785747..3786214 (+) 468 WP_000340167.1 A24 family peptidase Machinery gene
  QUD91_RS18755 (JNE141411_35640) bfr 3786211..3786687 (-) 477 WP_000675515.1 bacterioferritin -
  QUD91_RS18760 (JNE141411_35650) bfd 3786760..3786954 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  QUD91_RS18765 (JNE141411_35660) tuf 3787137..3788321 (-) 1185 WP_000031783.1 elongation factor Tu -
  QUD91_RS18770 (JNE141411_35670) fusA 3788392..3790506 (-) 2115 WP_000124700.1 elongation factor G -
  QUD91_RS18775 (JNE141411_35680) rpsG 3790603..3791073 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16984.17 Da        Isoelectric Point: 8.0293

>NTDB_id=85262 QUD91_RS18750 WP_000340167.1 3785747..3786214(+) (pilD) [Escherichia coli strain JNE141411]
MDATLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDCLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=85262 QUD91_RS18750 WP_000340167.1 3785747..3786214(+) (pilD) [Escherichia coli strain JNE141411]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACTGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZSL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361

Multiple sequence alignment