Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   V6S27_RS12565 Genome accession   NZ_CP145703
Coordinates   2385497..2385964 (+) Length   155 a.a.
NCBI ID   WP_000338336.1    Uniprot ID   -
Organism   Escherichia coli strain S1-CAM-04-C     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2380497..2390964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6S27_RS12520 (V6S27_12520) rplP 2380607..2381017 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  V6S27_RS12525 (V6S27_12525) rpsC 2381030..2381731 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  V6S27_RS12530 (V6S27_12530) rplV 2381749..2382081 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  V6S27_RS12535 (V6S27_12535) rpsS 2382096..2382374 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  V6S27_RS12540 (V6S27_12540) rplB 2382391..2383212 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  V6S27_RS12545 (V6S27_12545) rplW 2383230..2383532 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  V6S27_RS12550 (V6S27_12550) rplD 2383529..2384134 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  V6S27_RS12555 (V6S27_12555) rplC 2384145..2384774 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  V6S27_RS12560 (V6S27_12560) rpsJ 2384807..2385118 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  V6S27_RS12565 (V6S27_12565) pilD 2385497..2385964 (+) 468 WP_000338336.1 A24 family peptidase Machinery gene
  V6S27_RS12570 (V6S27_12570) bfr 2385961..2386437 (-) 477 WP_000675515.1 bacterioferritin -
  V6S27_RS12575 (V6S27_12575) bfd 2386510..2386704 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  V6S27_RS12580 (V6S27_12580) tuf 2386887..2388071 (-) 1185 WP_000031783.1 elongation factor Tu -
  V6S27_RS12585 (V6S27_12585) fusA 2388142..2390256 (-) 2115 WP_000124703.1 elongation factor G -
  V6S27_RS12590 (V6S27_12590) rpsG 2390353..2390823 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17034.17 Da        Isoelectric Point: 8.1255

>NTDB_id=852604 V6S27_RS12565 WP_000338336.1 2385497..2385964(+) (pilD) [Escherichia coli strain S1-CAM-04-C]
MDAALPFLILYACLSTLLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=852604 V6S27_RS12565 WP_000338336.1 2385497..2385964(+) (pilD) [Escherichia coli strain S1-CAM-04-C]
ATGGACGCTGCCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCAACCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGGTTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGCCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACATGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTTTGCTTATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGTCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGCTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.882

81.935

0.368