Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   QYM22_RS16495 Genome accession   NZ_CP129342
Coordinates   3158025..3160373 (-) Length   782 a.a.
NCBI ID   WP_046132105.1    Uniprot ID   A0AAJ4D3B8
Organism   Bacillus glycinifermentans strain SRCM12603     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3153025..3165373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM22_RS16480 (QYM22_16480) dtd 3154670..3155113 (-) 444 WP_046132108.1 D-aminoacyl-tRNA deacylase -
  QYM22_RS16485 (QYM22_16485) - 3155126..3157327 (-) 2202 WP_046132107.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  QYM22_RS16490 (QYM22_16490) - 3157495..3158007 (-) 513 WP_046132106.1 adenine phosphoribosyltransferase -
  QYM22_RS16495 (QYM22_16495) recJ 3158025..3160373 (-) 2349 WP_046132105.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  QYM22_RS16500 (QYM22_16500) - 3160442..3160735 (-) 294 WP_046132104.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  QYM22_RS16505 (QYM22_16505) - 3160822..3161316 (-) 495 WP_046132103.1 cation:proton antiporter regulatory subunit -
  QYM22_RS16510 (QYM22_16510) secDF 3161457..3163682 (-) 2226 WP_046132102.1 protein translocase subunit SecDF -
  QYM22_RS16515 (QYM22_16515) - 3163722..3164018 (-) 297 WP_046132101.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 782 a.a.        Molecular weight: 87883.46 Da        Isoelectric Point: 4.8928

>NTDB_id=852499 QYM22_RS16495 WP_046132105.1 3158025..3160373(-) (recJ) [Bacillus glycinifermentans strain SRCM12603]
MLASKMRWDMQTPDKEKVESLSGELGITPLAASLLVMRGYDTADKAASFLYGKDAVFHDPYLLKDMEKAVRRIKQAISEH
EQMMIYGDYDADGVTSTTVLLQALKTFGANVDFYIPDRFKEGYGPNEAAFRQFKEQGCSLIITVDTGIAGVHEADVAKEL
GIDLIITDHHEPGSVLPDAYAIVHPKQPGCSYPFKELAGVGVAFKLAHALLGEVPEELLDLCAIGTIADLVPLHDENRHI
AKLGIAQFKKTKRPGLKALAKIAGAEIQQANEETIGFQIAPRINAVGRIEQADPAVHLLNTEDETEAEELAAEIDSLNKE
RQKIVNQITDEAVQMIEEQGLDQSVIVAAQPGWNPGVVGIVASKLVERFYRPAIVLGIDEEKGIAKGSARSIKGFDLFQN
LSECRDILPHFGGHPMAAGMTLDQEDVEVLRERINRQAEAVLTEEDFIPVQEVDLCCRLEDITVDSIAEMNMLAPFGTGN
PKPFVLVEEAEIEEARKIGANQNHLKLMLADGQAKLDCVGFYKGEIEENVVPGAKISLVGELSINEWNNRKKPQLMIKDA
AVKEWQLFDLRGKRSWEEKILKLDPEKRSFICFREETKTKLADTGLRDELIVIRSEEEAMKLDLHNRYAVFIDTPQSIDI
FDHAVKEKRLERMYLIFNQSDDHFFSTFPTRDYFKWYYAFLLKRGSFDLAKYGGELARHKGWTKDTIDFMTKVFFELGFV
TIENGVLSVVHGAAKRDLTDSETYRKKQRLIELEQKLVYSSADELKQWLNKRMNESSEALKV

Nucleotide


Download         Length: 2349 bp        

>NTDB_id=852499 QYM22_RS16495 WP_046132105.1 3158025..3160373(-) (recJ) [Bacillus glycinifermentans strain SRCM12603]
ATGTTAGCGTCAAAAATGCGTTGGGACATGCAAACGCCCGACAAAGAAAAGGTGGAGTCGCTTTCCGGAGAATTGGGCAT
CACTCCCCTTGCCGCCTCATTGCTTGTCATGAGAGGCTATGATACAGCCGATAAAGCAGCTTCGTTTTTATATGGCAAAG
ATGCTGTCTTTCATGATCCCTATCTGCTAAAAGATATGGAAAAAGCTGTACGGCGAATCAAACAGGCAATTTCGGAACAC
GAACAGATGATGATTTATGGAGATTACGATGCGGACGGTGTGACAAGTACGACCGTCCTTTTGCAGGCTTTAAAAACATT
TGGAGCAAACGTCGATTTTTATATACCGGACCGTTTTAAAGAAGGCTACGGTCCCAATGAAGCCGCTTTCCGCCAGTTCA
AAGAACAGGGCTGTTCTTTGATCATCACGGTGGACACAGGGATTGCCGGCGTTCATGAAGCGGATGTCGCCAAAGAACTC
GGTATCGACCTGATTATCACCGACCACCACGAACCGGGATCGGTTTTACCTGATGCGTATGCGATCGTCCATCCGAAGCA
GCCCGGCTGCAGCTATCCGTTTAAAGAGCTTGCCGGCGTCGGGGTGGCATTCAAGCTTGCCCACGCGCTTCTCGGAGAGG
TTCCCGAAGAGCTGCTCGACTTGTGCGCCATCGGGACGATTGCCGACCTTGTGCCGCTTCATGATGAGAACAGGCACATC
GCCAAGCTTGGCATCGCACAGTTTAAGAAAACGAAGCGGCCCGGCTTAAAAGCGCTGGCGAAGATCGCGGGAGCGGAGAT
TCAGCAGGCGAATGAAGAAACGATCGGTTTTCAAATCGCGCCCCGCATCAATGCCGTCGGCAGAATTGAGCAGGCTGATC
CGGCCGTTCACCTTTTGAACACAGAGGATGAAACAGAAGCGGAAGAGCTTGCCGCAGAAATTGACAGCTTAAATAAAGAG
CGGCAAAAAATCGTCAATCAGATCACCGATGAAGCTGTTCAAATGATAGAGGAGCAAGGTCTTGACCAATCAGTTATCGT
AGCTGCGCAGCCCGGCTGGAATCCCGGAGTGGTCGGGATCGTCGCTTCAAAGCTTGTCGAACGGTTTTACCGGCCGGCCA
TCGTGCTCGGAATCGATGAAGAAAAAGGCATCGCCAAAGGATCTGCGCGCAGCATCAAAGGTTTTGACCTGTTTCAAAAC
CTCTCGGAATGCCGGGACATCCTTCCGCATTTCGGCGGCCATCCGATGGCGGCCGGGATGACGCTCGATCAGGAAGACGT
CGAGGTACTGAGGGAAAGGATCAATCGTCAGGCCGAAGCCGTCTTGACGGAGGAAGATTTCATTCCCGTGCAGGAAGTCG
ACCTTTGCTGCCGCTTGGAGGATATTACGGTTGACAGCATCGCTGAAATGAATATGCTCGCTCCATTCGGCACGGGAAAC
CCGAAGCCTTTCGTACTCGTGGAAGAGGCCGAAATCGAAGAAGCGAGAAAAATCGGCGCCAATCAAAATCACTTGAAGCT
CATGCTTGCCGATGGACAGGCAAAGCTGGACTGCGTCGGTTTTTATAAAGGGGAAATCGAAGAAAACGTCGTTCCCGGAG
CGAAGATTTCTCTCGTCGGCGAACTGTCGATCAACGAATGGAACAATAGAAAAAAACCGCAATTGATGATAAAAGATGCA
GCCGTAAAAGAATGGCAGCTCTTTGATTTAAGAGGAAAGCGGTCATGGGAAGAAAAAATTCTGAAATTGGACCCTGAAAA
GCGTTCATTCATTTGTTTTCGGGAGGAAACAAAAACAAAACTGGCGGATACCGGCCTGCGTGATGAGCTGATCGTGATCA
GAAGCGAAGAAGAGGCAATGAAGCTCGATCTACATAATCGCTATGCCGTTTTTATCGATACGCCGCAATCGATTGATATA
TTTGACCATGCTGTAAAAGAAAAACGGCTGGAGCGGATGTATTTAATTTTCAACCAATCTGATGATCACTTTTTTTCCAC
ATTTCCGACAAGGGATTATTTTAAATGGTATTATGCTTTTCTTCTGAAAAGAGGCTCTTTTGACCTGGCGAAATACGGCG
GAGAGCTGGCCAGGCATAAAGGGTGGACAAAAGATACAATCGATTTTATGACAAAGGTGTTTTTTGAGCTCGGTTTTGTT
ACAATAGAGAATGGTGTTTTATCTGTTGTACATGGTGCGGCAAAACGGGATTTAACAGATTCTGAAACGTACCGGAAAAA
ACAGCGCCTGATTGAATTGGAGCAAAAGCTCGTCTATTCTTCGGCGGATGAGCTTAAACAGTGGCTGAATAAGCGGATGA
ATGAGAGTTCTGAAGCTTTGAAAGTATGA

Domains

Predicted by InterproScan.

DHH family (DHH)

(83-226)

RecJ OB domain (RecJ_OB)

(453-559)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHHA1 domain (DHHA1)

(315-436)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

69.705

99.616

0.694