Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QYM22_RS09685 Genome accession   NZ_CP129342
Coordinates   1862046..1862825 (+) Length   259 a.a.
NCBI ID   WP_006638180.1    Uniprot ID   A0A6I7F231
Organism   Bacillus glycinifermentans strain SRCM12603     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1857046..1867825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM22_RS09665 (QYM22_09665) trmFO 1857747..1859051 (+) 1305 WP_046128971.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QYM22_RS09670 (QYM22_09670) xerC 1859118..1860032 (+) 915 WP_046128970.1 tyrosine recombinase XerC -
  QYM22_RS09675 (QYM22_09675) hslV 1860046..1860588 (+) 543 WP_046128969.1 ATP-dependent protease subunit HslV -
  QYM22_RS09680 (QYM22_09680) hslU 1860605..1862008 (+) 1404 WP_046128968.1 HslU--HslV peptidase ATPase subunit -
  QYM22_RS09685 (QYM22_09685) codY 1862046..1862825 (+) 780 WP_006638180.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QYM22_RS09690 (QYM22_09690) flgB 1863167..1863556 (+) 390 WP_046128967.1 flagellar basal body rod protein FlgB -
  QYM22_RS09695 (QYM22_09695) flgC 1863556..1864008 (+) 453 WP_046128966.1 flagellar basal body rod protein FlgC -
  QYM22_RS09700 (QYM22_09700) fliE 1864021..1864338 (+) 318 WP_065894398.1 flagellar hook-basal body complex protein FliE -
  QYM22_RS09705 (QYM22_09705) fliF 1864389..1865990 (+) 1602 WP_046128964.1 flagellar basal-body MS-ring/collar protein FliF -
  QYM22_RS09710 (QYM22_09710) fliG 1866004..1867020 (+) 1017 WP_046128963.1 flagellar motor switch protein FliG -
  QYM22_RS09715 (QYM22_09715) fliH 1867004..1867771 (+) 768 WP_052948478.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29087.45 Da        Isoelectric Point: 4.8196

>NTDB_id=852483 QYM22_RS09685 WP_006638180.1 1862046..1862825(+) (codY) [Bacillus glycinifermentans strain SRCM12603]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=852483 QYM22_RS09685 WP_006638180.1 1862046..1862825(+) (codY) [Bacillus glycinifermentans strain SRCM12603]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTCAAAGAAAT
GGCCGAAACGCTTCGCGATGTAATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAACTTCTCGGCTTCTCTATCA
ACCAGCAGATCGAAAACGACCGGATGAAAAAAATGCTTGAAGAACGCCAGTTCCCTGAGGATTACACAAAAAGCCTGTTC
AACATTCCGGAAACATCATCAAACCTCGACATTAACAGCGAATACACGGCGTTCCCTGTCGAAAACCGCGATCTTTTCCA
AGCAGGGTTGACAACGATCGTACCGATCATCGGCGGAGGTGAAAGACTCGGAACATTGATTCTTTCCCGTCTTCAGGAAA
AATTTGAAGATGATGATCTGATCCTTGCCGAATATGGCGCAACTGTCGTCGGAATGGAGATTCTCAGAGAGAAAGCCGAA
GAAATCGAAGAGGAAGCCCGCAGCAAGGCTGTCGTTCAAATGGCGATCAGTTCATTATCTTACAGCGAGCTTGAAGCGAT
TGAACATATCTTCGAGGAGCTCGATGGGAACGAAGGCCTGCTCGTTGCAAGTAAAATTGCAGACCGCGTCGGCATTACGC
GCTCGGTTATCGTAAATGCGCTGAGAAAACTCGAAAGCGCAGGCGTTATTGAGTCCCGCTCATTAGGGATGAAAGGCACA
TACATTAAAGTGCTGAACAACAAGTTCCTGATGGAGCTTGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I7F231

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.981

100

0.95
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467