Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   QYH55_RS05525 Genome accession   NZ_CP129341
Coordinates   1141757..1142581 (-) Length   274 a.a.
NCBI ID   WP_301557949.1    Uniprot ID   -
Organism   Ligilactobacillus ruminis strain SRCM218231     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1136757..1147581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYH55_RS05495 (QYH55_05495) - 1137442..1138119 (-) 678 WP_170089418.1 DUF3862 domain-containing protein -
  QYH55_RS05500 (QYH55_05500) - 1138171..1138746 (-) 576 WP_301557947.1 NUMOD4 domain-containing protein -
  QYH55_RS05505 (QYH55_05505) - 1139002..1139238 (-) 237 WP_273744850.1 hypothetical protein -
  QYH55_RS05510 (QYH55_05510) - 1139361..1140605 (-) 1245 WP_014073504.1 RNA-guided endonuclease TnpB family protein -
  QYH55_RS05515 (QYH55_05515) - 1140740..1140931 (-) 192 WP_301557948.1 hypothetical protein -
  QYH55_RS05520 (QYH55_05520) - 1141011..1141667 (-) 657 WP_170089420.1 nitroreductase family protein -
  QYH55_RS05525 (QYH55_05525) endA 1141757..1142581 (-) 825 WP_301557949.1 DNA/RNA non-specific endonuclease Machinery gene
  QYH55_RS05530 (QYH55_05530) - 1143044..1143202 (-) 159 WP_301557950.1 methyl-accepting chemotaxis protein -
  QYH55_RS05540 (QYH55_05540) - 1143524..1144426 (-) 903 WP_301557951.1 IS3 family transposase -
  QYH55_RS05545 (QYH55_05545) - 1144423..1144956 (-) 534 WP_301557952.1 transposase -

Sequence

Protein


Download         Length: 274 a.a.        Molecular weight: 30549.92 Da        Isoelectric Point: 9.7343

>NTDB_id=852438 QYH55_RS05525 WP_301557949.1 1141757..1142581(-) (endA) [Ligilactobacillus ruminis strain SRCM218231]
MVKRRKQNKSFATLIIAIGLVLLSWTAFGKKIGLDEWLNSGGQSQTSRVQNDESTPERHLAESVLSDSIRQRLGQKIEWN
GHGAFIINDNKTDLNANVSSAPYAVNRKETGAMIGDAWLNKTTRQYKNRSETGQGRTDWRPQGFKQKLDLSGRYSHAYDR
GHLLAYSLVGGLRGFDASEANHDNIATQTAWANEAQSANSTGQNYYEGLVRKALDQNERVRYRVTDLFEEGNLVPSGAHI
EAKSRSGSLEFNVFVPNVQKGIEINYQTGDVSVK

Nucleotide


Download         Length: 825 bp        

>NTDB_id=852438 QYH55_RS05525 WP_301557949.1 1141757..1142581(-) (endA) [Ligilactobacillus ruminis strain SRCM218231]
ATGGTCAAAAGAAGAAAACAAAACAAAAGCTTTGCGACCCTGATCATTGCCATCGGGTTGGTCTTGCTTAGCTGGACTGC
CTTCGGCAAAAAAATCGGCTTGGACGAGTGGCTGAATTCAGGAGGTCAATCTCAAACAAGCCGTGTCCAAAACGACGAAA
GCACACCGGAAAGACATCTTGCGGAAAGCGTTTTGAGCGATTCAATCAGACAAAGACTCGGACAGAAAATCGAGTGGAAC
GGACATGGAGCCTTCATCATCAATGATAACAAGACTGATTTGAATGCCAATGTTTCAAGTGCTCCGTATGCGGTCAACAG
AAAAGAAACCGGGGCGATGATCGGGGATGCCTGGCTGAACAAGACGACCAGACAATACAAAAATCGCAGCGAAACCGGCC
AGGGCAGGACCGACTGGCGCCCCCAAGGATTCAAACAAAAACTTGATTTGAGCGGTCGCTACTCTCATGCTTATGACAGA
GGTCACTTGCTGGCTTATTCTTTGGTCGGAGGACTGAGAGGGTTTGACGCATCTGAAGCAAATCACGACAATATCGCAAC
GCAGACGGCCTGGGCAAATGAGGCCCAAAGTGCAAATTCGACCGGTCAAAACTACTATGAAGGACTTGTCCGAAAAGCGC
TTGATCAAAATGAACGGGTTCGCTATCGCGTTACCGATTTGTTTGAAGAAGGAAATCTGGTTCCTTCCGGGGCGCACATT
GAGGCCAAAAGCAGATCGGGATCGCTTGAATTCAACGTGTTCGTGCCAAACGTTCAAAAGGGCATCGAAATCAATTACCA
AACCGGAGACGTCAGCGTCAAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(119-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

59.821

81.752

0.489
  endA Streptococcus pneumoniae D39

59.821

81.752

0.489
  endA Streptococcus pneumoniae R6

59.821

81.752

0.489
  endA Streptococcus pneumoniae TIGR4

59.821

81.752

0.489