Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   QYH53_RS03005 Genome accession   NZ_CP129340
Coordinates   592262..593098 (+) Length   278 a.a.
NCBI ID   WP_010689462.1    Uniprot ID   -
Organism   Ligilactobacillus animalis strain SRCM217975     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 587262..598098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYH53_RS02980 (QYH53_02980) - 588366..588632 (+) 267 WP_005922582.1 hypothetical protein -
  QYH53_RS02985 (QYH53_02985) - 589448..589810 (-) 363 WP_066024045.1 DUF1801 domain-containing protein -
  QYH53_RS02990 (QYH53_02990) - 589878..590303 (+) 426 WP_279074805.1 N-acetyltransferase -
  QYH53_RS02995 (QYH53_02995) - 590359..591006 (-) 648 WP_010689466.1 nitroreductase -
  QYH53_RS03000 (QYH53_03000) asnA 591195..592202 (+) 1008 WP_010689464.1 aspartate--ammonia ligase -
  QYH53_RS03005 (QYH53_03005) endA 592262..593098 (+) 837 WP_010689462.1 DNA/RNA non-specific endonuclease Machinery gene
  QYH53_RS03010 (QYH53_03010) - 593266..594141 (+) 876 WP_301410304.1 type II CAAX endopeptidase family protein -
  QYH53_RS03015 (QYH53_03015) - 594270..594944 (+) 675 WP_010689458.1 ABC transporter ATP-binding protein -
  QYH53_RS03020 (QYH53_03020) - 595022..595393 (-) 372 WP_010689456.1 DUF4828 domain-containing protein -
  QYH53_RS03025 (QYH53_03025) - 595615..596631 (+) 1017 WP_035447414.1 Gfo/Idh/MocA family oxidoreductase -
  QYH53_RS03030 (QYH53_03030) - 596643..597899 (+) 1257 WP_301410306.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 278 a.a.        Molecular weight: 30320.00 Da        Isoelectric Point: 10.5647

>NTDB_id=852405 QYH53_RS03005 WP_010689462.1 592262..593098(+) (endA) [Ligilactobacillus animalis strain SRCM217975]
MKFKKILTGFAAALMLSGAIGAPITAKATTHYGGWRTHQKNSSSGSGELKKSTPSQQLAQTVLTPDVVKQLGGEQNLKWN
NSGAFIVNNNKADLKAKVSSAPYATNEVDSLKRPTVANALLNRTTRQYKNRHQTNNGSTKWKPQGFKQLTNLSGAYNHAY
DRGHLLGYALVGNIRGFDASESNPKNIATQTAWANEANAKYSTGQNYYESLVRKALDRNKTVRYRVTNIYSGNNLVPAGA
HLEAKSSDGSLEYNVFIPNVQKGLKIDYATGHATKVNN

Nucleotide


Download         Length: 837 bp        

>NTDB_id=852405 QYH53_RS03005 WP_010689462.1 592262..593098(+) (endA) [Ligilactobacillus animalis strain SRCM217975]
ATGAAGTTCAAAAAAATACTGACCGGATTTGCGGCAGCTTTGATGCTCAGTGGTGCGATCGGGGCACCGATAACGGCCAA
AGCAACTACTCACTATGGTGGCTGGCGTACACATCAAAAAAATAGCTCGAGTGGCTCGGGTGAACTAAAAAAGAGCACCC
CATCACAACAATTAGCCCAAACAGTTTTGACACCTGATGTTGTTAAACAATTGGGCGGTGAGCAAAATCTCAAATGGAAC
AACAGTGGGGCTTTTATCGTTAATAACAACAAGGCAGATCTAAAAGCTAAGGTTTCTAGTGCACCTTATGCAACAAATGA
AGTCGATAGCTTGAAACGTCCGACGGTGGCAAACGCCCTTTTGAATAGGACAACGCGTCAATACAAGAATCGCCACCAAA
CTAATAATGGTTCGACTAAATGGAAACCACAGGGCTTTAAGCAACTCACTAACTTAAGTGGCGCCTACAACCATGCTTAT
GATCGCGGTCACTTACTAGGGTATGCTTTAGTTGGAAATATTCGTGGTTTTGATGCGAGTGAGAGCAATCCTAAAAATAT
TGCGACTCAAACTGCTTGGGCTAATGAAGCTAATGCAAAGTATTCAACAGGCCAAAATTATTACGAAAGTCTTGTTCGAA
AAGCCTTGGATCGTAATAAGACTGTCCGTTATCGTGTGACAAATATCTATAGTGGTAATAATTTAGTCCCAGCAGGAGCT
CACTTGGAAGCCAAATCAAGTGATGGTTCGTTGGAATATAATGTTTTTATCCCTAATGTTCAAAAGGGCTTAAAGATCGA
CTATGCTACTGGTCATGCGACAAAAGTGAACAACTGA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(83-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

64.889

80.935

0.525
  endA Streptococcus pneumoniae D39

64.889

80.935

0.525
  endA Streptococcus pneumoniae R6

64.889

80.935

0.525
  endA Streptococcus pneumoniae TIGR4

64.889

80.935

0.525