Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   V6S30_RS15600 Genome accession   NZ_CP145694
Coordinates   3081455..3081922 (-) Length   155 a.a.
NCBI ID   WP_000339836.1    Uniprot ID   -
Organism   Escherichia coli strain S1-KEN-04-A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3076455..3086922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6S30_RS15575 (V6S30_15575) rpsG 3076596..3077066 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  V6S30_RS15580 (V6S30_15580) fusA 3077163..3079277 (+) 2115 WP_000124700.1 elongation factor G -
  V6S30_RS15585 (V6S30_15585) tuf 3079348..3080532 (+) 1185 WP_000031783.1 elongation factor Tu -
  V6S30_RS15590 (V6S30_15590) bfd 3080715..3080909 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  V6S30_RS15595 (V6S30_15595) bfr 3080982..3081458 (+) 477 WP_000675515.1 bacterioferritin -
  V6S30_RS15600 (V6S30_15600) pilD 3081455..3081922 (-) 468 WP_000339836.1 A24 family peptidase Machinery gene
  V6S30_RS15605 (V6S30_15605) rpsJ 3082301..3082612 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  V6S30_RS15610 (V6S30_15610) rplC 3082645..3083274 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  V6S30_RS15615 (V6S30_15615) rplD 3083285..3083890 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  V6S30_RS15620 (V6S30_15620) rplW 3083887..3084189 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  V6S30_RS15625 (V6S30_15625) rplB 3084207..3085028 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  V6S30_RS15630 (V6S30_15630) rpsS 3085045..3085323 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  V6S30_RS15635 (V6S30_15635) rplV 3085338..3085670 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  V6S30_RS15640 (V6S30_15640) rpsC 3085688..3086389 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  V6S30_RS15645 (V6S30_15645) rplP 3086402..3086812 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16951.08 Da        Isoelectric Point: 8.1296

>NTDB_id=852374 V6S30_RS15600 WP_000339836.1 3081455..3081922(-) (pilD) [Escherichia coli strain S1-KEN-04-A]
MDANLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=852374 V6S30_RS15600 WP_000339836.1 3081455..3081922(-) (pilD) [Escherichia coli strain S1-KEN-04-A]
ATGGACGCTAACCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTAGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361