NTDB

Overview

Name	endA	Type	Machinery gene
Locus tag	QYR55_RS05885	Genome accession	NZ_CP129328
Coordinates	1192138..1193001 (-)	Length	287 a.a.
NCBI ID	WP_003099993.1	Uniprot ID	A0A3L8GIC3
Organism	Streptococcus iniae strain Si 1-19
Function	cleavage of dsDNA into ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 1187138..1198001

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QYR55_RS05865 (QYR55_05865)	-	1187392..1187772 (-)	381	WP_003099988.1	OsmC family protein	-
QYR55_RS05870 (QYR55_05870)	pheT	1187845..1190250 (-)	2406	WP_367561331.1	phenylalanine--tRNA ligase subunit beta	-
QYR55_RS05875 (QYR55_05875)	-	1190266..1190790 (-)	525	WP_003099991.1	N-acetyltransferase	-
QYR55_RS05880 (QYR55_05880)	pheS	1190803..1191846 (-)	1044	WP_367562522.1	phenylalanine--tRNA ligase subunit alpha	-
QYR55_RS05885 (QYR55_05885)	endA	1192138..1193001 (-)	864	WP_003099993.1	DNA/RNA non-specific endonuclease	Machinery gene
QYR55_RS05890 (QYR55_05890)	-	1193032..1193220 (-)	189	WP_003099995.1	DNA-directed RNA polymerase subunit beta	-
QYR55_RS05895 (QYR55_05895)	murA	1193224..1194495 (-)	1272	WP_367562140.1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	-
QYR55_RS05900 (QYR55_05900)	-	1194561..1194797 (-)	237	WP_071794729.1	DUF1146 family protein	-
QYR55_RS05905 (QYR55_05905)	-	1194873..1195289 (-)	417	WP_003100001.1	F0F1 ATP synthase subunit epsilon	-
QYR55_RS05910 (QYR55_05910)	atpD	1195302..1196708 (-)	1407	WP_003100002.1	F0F1 ATP synthase subunit beta	-
QYR55_RS05915 (QYR55_05915)	-	1196824..1197699 (-)	876	WP_003100004.1	F0F1 ATP synthase subunit gamma	-

Sequence

Protein

Download Length: 287 a.a. Molecular weight: 31715.35 Da Isoelectric Point: 9.3865

                                >NTDB_id=852261 QYR55_RS05885 WP_003099993.1 1192138..1193001(-) (endA) [Streptococcus iniae strain Si 1-19]

MSPKTKQSQKINLLLFLLVLVGLFYLIDSKEGEENNPIRAFYQSVMGASNQTSQKESSNPDTPSYALASSVLTEKVKRQL

GSKVEWNGNGAFVINDNSTNLDAKVSSAPYAHNQTRLLSGKKLPTVANALLAKSTRQYRDRNETGNGYSYWKPAGWHQIH

GLSGKYDHAVDRGHLLGYALVGGLKGFDASTSNSDNIATQLSWANQAMDSDSTGQNYYETKIRRALDKNKRVRYRVTLIY

EADNILASGSHLEAKSDDGSLEFNVFVPNVQKGLEVDYQTGQITVSH

Nucleotide

Download Length: 864 bp

                                >NTDB_id=852261 QYR55_RS05885 WP_003099993.1 1192138..1193001(-) (endA) [Streptococcus iniae strain Si 1-19]

ATGTCACCAAAGACAAAACAAAGTCAAAAAATCAATCTATTATTGTTTCTGCTTGTGCTCGTTGGCTTATTCTATTTGAT

TGATAGTAAAGAAGGGGAAGAGAATAATCCTATTCGAGCCTTTTATCAATCAGTGATGGGAGCTTCCAATCAAACTAGCC

AAAAAGAATCAAGCAATCCTGATACACCAAGTTATGCCTTGGCATCTTCGGTTTTAACAGAAAAAGTAAAAAGACAACTT

GGTTCGAAAGTTGAGTGGAATGGTAATGGTGCATTTGTCATCAATGATAACAGTACCAATTTGGATGCAAAAGTATCCAG

TGCTCCCTATGCTCACAATCAAACCAGACTCTTATCAGGGAAAAAGCTTCCAACAGTCGCCAATGCTTTACTTGCCAAAT

CAACAAGGCAATACCGAGACCGAAACGAGACCGGAAATGGCTACTCTTATTGGAAACCTGCTGGTTGGCACCAGATTCAT

GGTTTATCAGGAAAATATGATCACGCTGTGGACCGTGGGCATTTATTAGGCTATGCTTTAGTGGGAGGTCTTAAAGGATT

TGATGCCTCTACAAGCAATAGCGATAACATAGCAACGCAATTATCCTGGGCTAACCAAGCGATGGATAGTGATTCCACTG

GCCAAAATTATTATGAAACAAAAATCAGACGTGCATTGGACAAGAATAAGCGTGTCCGTTACCGTGTTACCCTCATTTAC

GAGGCTGATAATATATTAGCAAGTGGAAGCCATTTAGAAGCAAAATCAGATGACGGCAGTTTAGAATTTAACGTTTTTGT

GCCAAATGTTCAAAAAGGTCTAGAAGTTGACTATCAAACAGGACAAATAACAGTCAGTCACTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(95-245)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A3L8GIC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
endA	Streptococcus pneumoniae Rx1	63.559	82.23	0.523
endA	Streptococcus pneumoniae D39	63.559	82.23	0.523
endA	Streptococcus pneumoniae R6	63.559	82.23	0.523
endA	Streptococcus pneumoniae TIGR4	63.559	82.23	0.523

Detailed information NTG0852261