Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   QYR59_RS05900 Genome accession   NZ_CP129326
Coordinates   1186068..1186931 (-) Length   287 a.a.
NCBI ID   WP_003099993.1    Uniprot ID   A0A3L8GIC3
Organism   Streptococcus iniae strain P3SAB     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1181068..1191931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYR59_RS05880 (QYR59_05880) - 1181321..1181701 (-) 381 WP_003099988.1 OsmC family protein -
  QYR59_RS05885 (QYR59_05885) pheT 1181774..1184179 (-) 2406 WP_367561331.1 phenylalanine--tRNA ligase subunit beta -
  QYR59_RS05890 (QYR59_05890) - 1184195..1184719 (-) 525 WP_003099991.1 N-acetyltransferase -
  QYR59_RS05895 (QYR59_05895) pheS 1184732..1185776 (-) 1045 Protein_1103 phenylalanine--tRNA ligase subunit alpha -
  QYR59_RS05900 (QYR59_05900) endA 1186068..1186931 (-) 864 WP_003099993.1 DNA/RNA non-specific endonuclease Machinery gene
  QYR59_RS05905 (QYR59_05905) - 1186962..1187150 (-) 189 WP_003099995.1 DNA-directed RNA polymerase subunit beta -
  QYR59_RS05910 (QYR59_05910) murA 1187154..1188425 (-) 1272 WP_367562140.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QYR59_RS05915 (QYR59_05915) - 1188491..1188727 (-) 237 WP_071794729.1 DUF1146 family protein -
  QYR59_RS05920 (QYR59_05920) - 1188803..1189219 (-) 417 WP_003100001.1 F0F1 ATP synthase subunit epsilon -
  QYR59_RS05925 (QYR59_05925) atpD 1189232..1190638 (-) 1407 WP_003100002.1 F0F1 ATP synthase subunit beta -
  QYR59_RS05930 (QYR59_05930) - 1190754..1191629 (-) 876 WP_003100004.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 31715.35 Da        Isoelectric Point: 9.3865

>NTDB_id=852165 QYR59_RS05900 WP_003099993.1 1186068..1186931(-) (endA) [Streptococcus iniae strain P3SAB]
MSPKTKQSQKINLLLFLLVLVGLFYLIDSKEGEENNPIRAFYQSVMGASNQTSQKESSNPDTPSYALASSVLTEKVKRQL
GSKVEWNGNGAFVINDNSTNLDAKVSSAPYAHNQTRLLSGKKLPTVANALLAKSTRQYRDRNETGNGYSYWKPAGWHQIH
GLSGKYDHAVDRGHLLGYALVGGLKGFDASTSNSDNIATQLSWANQAMDSDSTGQNYYETKIRRALDKNKRVRYRVTLIY
EADNILASGSHLEAKSDDGSLEFNVFVPNVQKGLEVDYQTGQITVSH

Nucleotide


Download         Length: 864 bp        

>NTDB_id=852165 QYR59_RS05900 WP_003099993.1 1186068..1186931(-) (endA) [Streptococcus iniae strain P3SAB]
ATGTCACCAAAGACAAAACAAAGTCAAAAAATCAATCTATTATTGTTTCTGCTTGTGCTCGTTGGCTTATTCTATTTGAT
TGATAGTAAAGAAGGGGAAGAGAATAATCCTATTCGAGCCTTTTATCAATCAGTGATGGGAGCTTCCAATCAAACTAGCC
AAAAAGAATCAAGCAATCCTGATACACCAAGTTATGCCTTGGCATCTTCGGTTTTAACAGAAAAAGTAAAAAGACAACTT
GGTTCGAAAGTTGAGTGGAATGGTAATGGTGCATTTGTCATCAATGATAACAGTACCAATTTGGATGCAAAAGTATCCAG
TGCTCCCTATGCTCACAATCAAACCAGACTCTTATCAGGGAAAAAGCTTCCAACAGTCGCCAATGCTTTACTTGCCAAAT
CAACAAGGCAATACCGAGACCGAAACGAGACCGGAAATGGCTACTCTTATTGGAAACCTGCTGGTTGGCACCAGATTCAT
GGTTTATCAGGAAAATATGATCACGCTGTGGACCGTGGGCATTTATTAGGCTATGCTTTAGTGGGAGGTCTTAAAGGATT
TGATGCCTCTACAAGCAATAGCGATAACATAGCAACGCAATTATCCTGGGCTAACCAAGCGATGGATAGTGATTCCACTG
GCCAAAATTATTATGAAACAAAAATCAGACGTGCATTGGACAAGAATAAGCGTGTCCGTTACCGTGTTACCCTCATTTAC
GAGGCTGATAATATATTAGCAAGTGGAAGCCATTTAGAAGCAAAATCAGATGACGGCAGTTTAGAATTTAACGTTTTTGT
GCCAAATGTTCAAAAAGGTCTAGAAGTTGACTATCAAACAGGACAAATAACAGTCAGTCACTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(95-245)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3L8GIC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

63.559

82.23

0.523
  endA Streptococcus pneumoniae D39

63.559

82.23

0.523
  endA Streptococcus pneumoniae R6

63.559

82.23

0.523
  endA Streptococcus pneumoniae TIGR4

63.559

82.23

0.523