Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   QYH60_RS04600 Genome accession   NZ_CP129292
Coordinates   865805..866743 (+) Length   312 a.a.
NCBI ID   WP_058207942.1    Uniprot ID   A0A9X4NCI1
Organism   Lactococcus lactis subsp. lactis strain KMGR2-43     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 860805..871743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYH60_RS04575 (QYH60_04575) - 860937..862103 (+) 1167 WP_301401452.1 DUF1430 domain-containing protein -
  QYH60_RS04580 (QYH60_04580) - 862104..862730 (+) 627 WP_278216248.1 ABC transporter ATP-binding protein -
  QYH60_RS04585 (QYH60_04585) - 862887..863345 (+) 459 WP_301401454.1 hypothetical protein -
  QYH60_RS04590 (QYH60_04590) typA 863533..865365 (+) 1833 WP_025016832.1 translational GTPase TypA -
  QYH60_RS04595 (QYH60_04595) - 865466..865717 (+) 252 WP_004254583.1 DUF3165 family protein -
  QYH60_RS04600 (QYH60_04600) comYH 865805..866743 (+) 939 WP_058207942.1 class I SAM-dependent methyltransferase Machinery gene
  QYH60_RS04605 (QYH60_04605) - 866939..868126 (+) 1188 WP_039116238.1 acetate kinase -
  QYH60_RS04610 (QYH60_04610) - 868283..869470 (+) 1188 WP_015427114.1 acetate kinase -
  QYH60_RS04615 (QYH60_04615) - 869604..870056 (+) 453 WP_012898517.1 hypothetical protein -
  QYH60_RS04620 (QYH60_04620) pyrH 870141..870857 (+) 717 WP_004254608.1 UMP kinase -
  QYH60_RS04625 (QYH60_04625) frr 871070..871627 (+) 558 WP_004254618.1 ribosome recycling factor -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34764.92 Da        Isoelectric Point: 4.3717

>NTDB_id=852089 QYH60_RS04600 WP_058207942.1 865805..866743(+) (comYH) [Lactococcus lactis subsp. lactis strain KMGR2-43]
MDMEKVAQGFELVVANIMLLSEKLDTDFYDAFVEQNAALLDDTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQPNHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
QAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVAKNFEVATTDGHTFAHHLLIEQSFNYLKEGSFAIFLAPEDLLTSP
QGPLLKEWISKHGSVMAVITLPKSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRESLEVFMEEFTKIVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=852089 QYH60_RS04600 WP_058207942.1 865805..866743(+) (comYH) [Lactococcus lactis subsp. lactis strain KMGR2-43]
ATGGATATGGAAAAAGTGGCTCAAGGTTTTGAGCTAGTTGTTGCAAATATTATGTTATTATCTGAGAAATTGGATACAGA
TTTTTATGATGCTTTTGTAGAACAAAATGCTGCTCTTTTAGATGATACTGACCAAGGAATTGTTGAATTGTCAGTAAATA
ATGACAAACTTCGTCAGTTAAATTTATCAAATAAGGAGTGGCAAAAACTTTTTCAATTTGTTTTGTTGAAAGGGTCACAA
GTCGCACCACTTCAGCCCAATCATGCAATGACTCCAGATGCAATTGGCTTAATTTTTAATTTCATTATTGAACATCTTAA
TAAAAATTCTGAACTTCGTTTAATTGAATTTGGGTCTGGTATGGGTAATCTTGCTGAAACGCTTTTGGTTAATCTTAATA
AAAAGGTTGATTATGTAGGCTTTGAAGTTGATGATTTACTTTTAGATTTGTCTGCTTCAATGGCTGAAATTATGGGGAGT
CAGGCTGAGTTCATGCAAATTGATGCAGTACAAAAGCGTTTGATGGAACCTGCAGACGTTGTTGTCAGTGATTTACCAAT
TGGTTTTTATCCAGATGATGAAGTTGCAAAGAATTTTGAAGTTGCGACTACTGACGGACATACTTTTGCTCATCATCTTT
TGATTGAGCAATCATTTAATTATTTAAAAGAGGGTTCTTTTGCCATTTTCCTAGCTCCAGAAGATTTACTGACAAGTCCT
CAAGGACCTCTATTAAAGGAGTGGATTAGTAAACATGGGAGTGTGATGGCTGTCATCACTTTACCAAAATCACTTTTTAA
TGCTGATGCTAAGGCGATTTATGTTTTGAAAAAGGGGCCGGCTGCACATGCAACTTTTGCTCACCCTTTGTCTTCACTGA
CAGACAGAGAAAGTTTAGAAGTCTTTATGGAAGAATTTACAAAAATTGTAAAATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

48.882

100

0.49
  comYH Streptococcus mutans UA159

48.562

100

0.487