Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   V6S34_RS18590 Genome accession   NZ_CP145671
Coordinates   3790244..3790711 (-) Length   155 a.a.
NCBI ID   WP_000338336.1    Uniprot ID   -
Organism   Escherichia coli strain S1-ZIM-01-A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3785244..3795711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6S34_RS18565 (V6S34_18565) rpsG 3785385..3785855 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  V6S34_RS18570 (V6S34_18570) fusA 3785952..3788066 (+) 2115 WP_000124703.1 elongation factor G -
  V6S34_RS18575 (V6S34_18575) tuf 3788137..3789321 (+) 1185 WP_000031783.1 elongation factor Tu -
  V6S34_RS18580 (V6S34_18580) bfd 3789504..3789698 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  V6S34_RS18585 (V6S34_18585) bfr 3789771..3790247 (+) 477 WP_000675515.1 bacterioferritin -
  V6S34_RS18590 (V6S34_18590) pilD 3790244..3790711 (-) 468 WP_000338336.1 A24 family peptidase Machinery gene
  V6S34_RS18595 (V6S34_18595) rpsJ 3791090..3791401 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  V6S34_RS18600 (V6S34_18600) rplC 3791434..3792063 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  V6S34_RS18605 (V6S34_18605) rplD 3792074..3792679 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  V6S34_RS18610 (V6S34_18610) rplW 3792676..3792978 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  V6S34_RS18615 (V6S34_18615) rplB 3792996..3793817 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  V6S34_RS18620 (V6S34_18620) rpsS 3793834..3794112 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  V6S34_RS18625 (V6S34_18625) rplV 3794127..3794459 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  V6S34_RS18630 (V6S34_18630) rpsC 3794477..3795178 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  V6S34_RS18635 (V6S34_18635) rplP 3795191..3795601 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17034.17 Da        Isoelectric Point: 8.1255

>NTDB_id=852037 V6S34_RS18590 WP_000338336.1 3790244..3790711(-) (pilD) [Escherichia coli strain S1-ZIM-01-A]
MDAALPFLILYACLSTLLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=852037 V6S34_RS18590 WP_000338336.1 3790244..3790711(-) (pilD) [Escherichia coli strain S1-ZIM-01-A]
ATGGACGCTGCCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCAACCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGGTTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGCCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACATGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTTTGCTTATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGTCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGCTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.882

81.935

0.368