Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   V6S38_RS20310 Genome accession   NZ_CP145662
Coordinates   4102779..4103543 (+) Length   254 a.a.
NCBI ID   WP_001136249.1    Uniprot ID   -
Organism   Escherichia coli strain S1-INA-02-B     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 4097779..4108543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6S38_RS20290 (V6S38_20290) acpT 4098733..4099320 (+) 588 WP_024250549.1 4'-phosphopantetheinyl transferase AcpT -
  V6S38_RS20295 (V6S38_20295) nikA 4099431..4101005 (+) 1575 WP_000953353.1 nickel ABC transporter substrate-binding protein -
  V6S38_RS20300 (V6S38_20300) nikB 4101005..4101949 (+) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  V6S38_RS20305 (V6S38_20305) nikC 4101946..4102779 (+) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  V6S38_RS20310 (V6S38_20310) amiE 4102779..4103543 (+) 765 WP_001136249.1 nickel import ATP-binding protein NikD Regulator
  V6S38_RS20315 (V6S38_20315) nikE 4103540..4104346 (+) 807 WP_000173663.1 nickel import ATP-binding protein NikE -
  V6S38_RS20320 (V6S38_20320) nikR 4104352..4104753 (+) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26831.45 Da        Isoelectric Point: 6.5992

>NTDB_id=851802 V6S38_RS20310 WP_001136249.1 4102779..4103543(+) (amiE) [Escherichia coli strain S1-INA-02-B]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAVALGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSQGKIVEQGDVETLFNAPKHTVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=851802 V6S38_RS20310 WP_001136249.1 4102779..4103543(+) (amiE) [Escherichia coli strain S1-INA-02-B]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTACACGGTGTATCGTTAACCCTGCA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGTGGCGCTGGGAATTCTGC
CCGCAGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCT
GGCGTTAGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTCACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCACAAGGTAAAATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATACGGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398