Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QWY22_RS08040 Genome accession   NZ_CP129238
Coordinates   1592346..1594808 (+) Length   820 a.a.
NCBI ID   WP_300983889.1    Uniprot ID   -
Organism   Planococcus sp. N056     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1587346..1599808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWY22_RS08015 (QWY22_08015) - 1587532..1588818 (-) 1287 WP_300983883.1 replication-associated recombination protein A -
  QWY22_RS08020 (QWY22_08020) - 1588952..1589368 (+) 417 WP_300983884.1 Rrf2 family transcriptional regulator -
  QWY22_RS08025 (QWY22_08025) - 1589382..1590515 (+) 1134 WP_300983885.1 cysteine desulfurase family protein -
  QWY22_RS08030 (QWY22_08030) mnmA 1590530..1591648 (+) 1119 WP_300983887.1 tRNA 2-thiouridine(34) synthase MnmA -
  QWY22_RS08035 (QWY22_08035) - 1591664..1592323 (+) 660 WP_300983888.1 tetratricopeptide repeat protein -
  QWY22_RS08040 (QWY22_08040) recD2 1592346..1594808 (+) 2463 WP_300983889.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QWY22_RS08045 (QWY22_08045) alaS 1595356..1597980 (+) 2625 WP_300984351.1 alanine--tRNA ligase -
  QWY22_RS08050 (QWY22_08050) - 1598070..1598336 (+) 267 WP_036806381.1 IreB family regulatory phosphoprotein -
  QWY22_RS08055 (QWY22_08055) ruvX 1598339..1598755 (+) 417 WP_300983890.1 Holliday junction resolvase RuvX -
  QWY22_RS08060 (QWY22_08060) - 1598769..1599077 (+) 309 WP_036806386.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 820 a.a.        Molecular weight: 91099.40 Da        Isoelectric Point: 5.0905

>NTDB_id=851792 QWY22_RS08040 WP_300983889.1 1592346..1594808(+) (recD2) [Planococcus sp. N056]
MTGQIDLFQEEVQFVLGRPVVSIFHNPQNLFSIAKVKIQETNTSYPEKEIIVSGYFPKLSLEEQYRFTGAVKNHPKYGVQ
FQVETFTKEVPETEQGIVHYLSSDMFNGIGRKTAETIVKKLGKDAIKKILEDPEALDAVPRLSDDKKDTIRSTLQMNLGL
ERVMIQLNDWGFGPQVGMRIYQAYREETIDVLTKNPYRLIEEIEGIGFQRADELGSKLGITGSHPDRIKASVLHLLNQAS
LSEGHVYLDAKTMIPMVKEMLESSQQEEIAIPMISKAMIELNEEGKVAGEETRLYLPSLYYSELGIATKLETLLSSQENR
DRFPASEVRKALGEAEERLGVNYAETQVQAIEQSINSSVMILTGGPGTGKTTVVRGLVEVYAELHGLSLDPKDYAKKKEP
FPIILAAPTGRAAKRLSESTELPAMTIHRLLGFNGQEKEEETERDIEGRLIIIDEMSMVDTWLAHQLLKAIPEDAQIIFV
GDQDQLPPVGPGQVLRDLLESKRIPTVELTDIYRQTSGSSIIELAHQMKNGQLPADITAKTADRSFIKAGADQIPQVVEK
VVKSALAKGHSIRDVQVLAPMYKGPAGIDALNRMIQEMVNPNTDGKRKELVFGDVTYRIGDKILQLVNQPESNVFNGDMG
EVIAILKAKETVEKQDLLVASFDGIEVTYQRSDLNQLTLAYCCSIHKSQGSEFPTVIMPVVRGYMKMLRRNLLYTGITRS
KDFLILCGDPQVFRYGVERTDDAQRMTTLKSRLQLSAVEPEEVQEAPSKAPADSKAAQEPAAAPVKKEAVGPVSLTAENA
HLIHPLIGMEGVKPTDFIEA

Nucleotide


Download         Length: 2463 bp        

>NTDB_id=851792 QWY22_RS08040 WP_300983889.1 1592346..1594808(+) (recD2) [Planococcus sp. N056]
ATGACCGGACAAATTGATTTATTCCAAGAAGAAGTGCAATTCGTGCTAGGCCGTCCTGTCGTCTCGATTTTTCACAATCC
CCAAAACTTATTTTCCATCGCCAAAGTGAAAATTCAAGAAACCAACACCTCTTACCCCGAAAAAGAAATTATCGTGTCGG
GCTATTTTCCGAAACTGTCGCTTGAGGAACAATACCGTTTTACGGGGGCTGTGAAAAATCATCCGAAATACGGCGTGCAG
TTCCAGGTCGAAACATTCACGAAAGAAGTGCCGGAAACCGAACAGGGCATCGTCCATTACTTATCGAGCGATATGTTTAA
CGGCATTGGCCGGAAGACAGCGGAAACAATCGTTAAAAAGCTTGGCAAAGACGCCATCAAAAAGATTCTGGAAGACCCGG
AAGCGCTCGATGCCGTGCCGCGTTTGTCGGACGACAAAAAAGACACCATCCGTTCGACGCTGCAAATGAATCTGGGGCTG
GAGCGGGTCATGATCCAATTGAACGACTGGGGTTTCGGCCCGCAAGTCGGCATGCGCATTTACCAGGCGTACCGCGAAGA
AACGATCGATGTATTGACGAAAAACCCGTACCGCTTGATTGAAGAAATCGAAGGAATCGGCTTCCAGCGCGCCGATGAGC
TCGGCTCGAAACTCGGCATCACCGGCAGCCACCCGGACCGCATCAAGGCGTCGGTGCTGCATTTATTAAACCAGGCGTCT
TTGTCTGAAGGGCATGTCTACCTGGATGCAAAAACGATGATTCCGATGGTGAAAGAGATGCTGGAATCGAGCCAGCAGGA
AGAAATTGCGATCCCGATGATTTCCAAAGCGATGATCGAACTGAATGAAGAAGGCAAAGTGGCGGGGGAAGAAACCCGGC
TTTATTTGCCGTCTTTGTATTATTCGGAACTCGGCATTGCGACCAAACTGGAAACTTTGCTGTCGTCGCAGGAAAACCGC
GACCGGTTCCCGGCGTCTGAAGTGCGGAAAGCGCTCGGCGAAGCAGAAGAGCGGCTTGGCGTGAATTACGCAGAAACGCA
AGTGCAGGCCATTGAACAAAGCATCAACTCGTCCGTCATGATCTTGACAGGCGGCCCGGGCACCGGCAAGACGACGGTCG
TCCGCGGCTTGGTCGAAGTGTACGCGGAACTCCATGGCCTGTCGCTCGACCCGAAAGACTATGCCAAGAAAAAAGAGCCG
TTCCCGATCATTTTGGCGGCTCCGACCGGGCGCGCAGCCAAACGGCTCAGCGAATCGACGGAACTGCCGGCGATGACGAT
CCACCGCTTGCTCGGCTTTAACGGACAGGAAAAAGAAGAAGAAACGGAGCGGGACATTGAAGGCCGCCTGATCATCATCG
ATGAAATGTCGATGGTCGATACTTGGCTCGCACATCAATTGTTAAAAGCCATTCCGGAAGACGCGCAGATCATTTTCGTG
GGCGACCAGGATCAGCTGCCGCCGGTCGGGCCGGGTCAGGTGCTGCGCGACTTGTTGGAATCAAAGCGCATTCCGACGGT
CGAACTGACCGACATTTACCGCCAGACGTCGGGTTCGTCGATCATCGAACTCGCCCACCAGATGAAAAACGGCCAGCTGC
CGGCGGACATTACTGCGAAAACTGCAGACCGTTCGTTTATCAAAGCGGGCGCCGACCAGATTCCGCAAGTGGTCGAAAAA
GTGGTCAAGAGCGCACTCGCAAAAGGGCATTCAATCCGGGACGTCCAGGTGCTCGCGCCGATGTACAAAGGGCCTGCCGG
CATCGATGCGCTCAACCGCATGATCCAGGAAATGGTCAACCCGAATACGGACGGCAAGCGGAAAGAATTGGTATTCGGCG
ATGTCACATACCGCATCGGCGATAAGATCCTGCAGCTTGTCAACCAGCCCGAAAGCAACGTCTTTAACGGCGATATGGGC
GAAGTCATCGCCATCTTGAAAGCGAAAGAAACGGTCGAGAAACAGGACCTGCTCGTCGCGTCGTTCGACGGCATCGAAGT
GACGTATCAGCGCTCCGATCTGAACCAGCTGACGCTCGCGTACTGCTGCTCGATCCATAAATCGCAAGGTTCGGAATTCC
CGACCGTCATCATGCCGGTTGTCCGCGGCTACATGAAAATGCTGCGGCGCAACCTTCTTTACACCGGCATCACGCGCAGC
AAGGACTTTCTGATCCTGTGCGGCGACCCGCAAGTATTCCGCTACGGCGTCGAACGGACCGACGATGCACAGCGCATGAC
AACGTTGAAGAGCCGCCTGCAGCTATCTGCGGTAGAACCGGAAGAAGTGCAGGAAGCTCCGTCAAAAGCGCCGGCTGACA
GCAAAGCGGCACAAGAGCCCGCTGCAGCACCGGTGAAAAAAGAAGCGGTGGGCCCAGTGAGCCTGACGGCTGAAAACGCC
CACCTGATCCATCCGCTGATCGGTATGGAAGGCGTCAAGCCGACTGATTTTATTGAAGCGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-652)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-727)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)

AAA domain (AAA_30)

(343-551)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

54.736

99.146

0.543