Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QWY21_RS08100 Genome accession   NZ_CP129236
Coordinates   1610122..1612521 (+) Length   799 a.a.
NCBI ID   WP_300988085.1    Uniprot ID   -
Organism   Planococcus sp. N022     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1605122..1617521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWY21_RS08075 (QWY21_08075) - 1605307..1606596 (-) 1290 WP_300988080.1 replication-associated recombination protein A -
  QWY21_RS08080 (QWY21_08080) - 1606729..1607145 (+) 417 WP_300988081.1 Rrf2 family transcriptional regulator -
  QWY21_RS08085 (QWY21_08085) - 1607160..1608293 (+) 1134 WP_300988082.1 cysteine desulfurase family protein -
  QWY21_RS08090 (QWY21_08090) mnmA 1608307..1609425 (+) 1119 WP_300988083.1 tRNA 2-thiouridine(34) synthase MnmA -
  QWY21_RS08095 (QWY21_08095) - 1609440..1610096 (+) 657 WP_300988084.1 tetratricopeptide repeat protein -
  QWY21_RS08100 (QWY21_08100) recD2 1610122..1612521 (+) 2400 WP_300988085.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QWY21_RS08105 (QWY21_08105) alaS 1613253..1615877 (+) 2625 WP_300988684.1 alanine--tRNA ligase -
  QWY21_RS08110 (QWY21_08110) - 1615968..1616234 (+) 267 WP_300988086.1 IreB family regulatory phosphoprotein -
  QWY21_RS08115 (QWY21_08115) ruvX 1616237..1616653 (+) 417 WP_300988087.1 Holliday junction resolvase RuvX -
  QWY21_RS08120 (QWY21_08120) - 1616667..1616975 (+) 309 WP_300988088.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 799 a.a.        Molecular weight: 88919.92 Da        Isoelectric Point: 5.0919

>NTDB_id=851751 QWY21_RS08100 WP_300988085.1 1610122..1612521(+) (recD2) [Planococcus sp. N022]
MAGQIDLFQEEVQFVLGRPVVSIFHNPDNLFTIAKVKIQQTNTSYEEKEIIVSGYFPKLSMEEQYRFTGLVKNHPKYGVQ
FQVETFTKEVPETEQGIIHYLSSDMFNGIGRKTAETIVKKLGKDAIKKILEDPEALDAVPRLSDDKKDNIRATLQMNLGL
ERVMIQLNDWGFGPQVGMRIYQAYREETIDLLTKNPFRLIEEIEGIGFQRADELGAKLGITGSHPDRIKASVLHLLNQAS
LSEGHVYVDAKTLIPLVKQLLETSQREDISIEAISKAMIELNNEGKVAGEETRLYLPSLYYSEVGIATKLETMLASQENR
TRFPASEVRRALGEAEERLGVNYAETQIEAIDSSINSSVMILTGGPGTGKTTVVRGLVEVYAELHGLSLDPKEYAKKKEP
FPIILAAPTGRAAKRLSESTELPAMTIHRLLGFNGQEKEEETEKEIEGRLIIIDEMSMVDTWLAHQLLKAVPEDAQIIFV
GDQDQLPPVGPGQVLRDMLDSKRIPTVELKDIYRQSSGSSIIELAHQMKNGQLPADITAKTADRSFIKAGADQIPSVVEK
VVKSALSKGHSIKDIQVLAPMYKGPAGIDALNRMIQEMVNPNTDGKRKELVFGDITYRIGDKILQLVNQPESNVFNGDMG
EVVAILKAKETVEKQDMLVASFDGIEVTYERSDLNQLTLAYCCSIHKAQGSEFPTVIMPVVRGYMKMLRRNLLYTGITRS
KDFLILCGDPSVFRFGVERTDDAKRMTTLKDRLARSEAEPVKEAAEEEVGPASLTADNAHAIHPLIGMEGVTPRDFMEA

Nucleotide


Download         Length: 2400 bp        

>NTDB_id=851751 QWY21_RS08100 WP_300988085.1 1610122..1612521(+) (recD2) [Planococcus sp. N022]
ATGGCAGGGCAAATCGATTTGTTTCAAGAAGAAGTTCAGTTTGTGCTGGGACGACCGGTCGTTTCTATTTTTCACAATCC
CGATAATTTATTTACCATCGCAAAAGTGAAAATCCAACAAACAAACACCTCGTACGAAGAAAAAGAAATCATCGTTTCCG
GCTATTTTCCTAAGTTGTCGATGGAAGAACAATACCGATTTACCGGTTTGGTCAAAAATCACCCGAAATACGGCGTCCAG
TTCCAAGTGGAGACATTTACGAAAGAAGTGCCGGAAACCGAACAAGGCATCATCCATTATTTATCGAGCGACATGTTTAA
CGGCATTGGCCGCAAAACCGCCGAGACGATTGTTAAAAAACTCGGCAAAGACGCCATCAAAAAAATTCTGGAAGACCCGG
AAGCACTCGACGCCGTTCCGCGGCTTTCTGACGATAAAAAAGACAACATCCGAGCGACATTGCAAATGAACCTTGGCCTT
GAGCGGGTAATGATCCAATTGAACGATTGGGGCTTTGGCCCGCAAGTCGGCATGCGCATTTATCAGGCATACCGGGAAGA
AACCATCGATCTGCTGACAAAAAATCCGTTTCGCCTGATTGAAGAAATCGAAGGCATCGGTTTCCAGCGGGCGGATGAGC
TTGGTGCCAAACTCGGAATCACCGGCAGCCACCCTGACCGCATCAAAGCGTCGGTTCTGCATTTGCTGAACCAGGCATCG
CTTTCTGAAGGGCATGTTTATGTTGATGCGAAAACGTTGATTCCACTTGTAAAGCAGCTGCTGGAAACGAGCCAGCGCGA
AGACATTTCAATCGAGGCCATCTCGAAAGCAATGATTGAATTGAATAATGAAGGCAAAGTAGCAGGAGAAGAAACGCGGC
TTTATTTGCCTTCGCTGTATTATTCTGAAGTGGGGATTGCGACAAAACTGGAAACGATGCTCGCATCCCAGGAAAACCGC
ACCCGGTTCCCAGCATCGGAAGTGCGGCGGGCACTCGGCGAAGCGGAAGAACGTCTCGGCGTCAATTATGCCGAGACGCA
AATCGAAGCGATCGATTCGAGCATCAATTCATCAGTGATGATATTGACTGGAGGGCCGGGGACAGGGAAAACGACTGTTG
TCAGGGGCTTAGTGGAAGTGTATGCGGAACTGCATGGCTTGTCGCTTGATCCGAAAGAATATGCAAAGAAAAAAGAGCCG
TTCCCAATCATTTTGGCCGCACCGACCGGACGCGCTGCGAAACGCCTGAGCGAATCGACTGAACTGCCGGCGATGACCAT
TCACCGGCTTCTTGGCTTTAACGGCCAGGAAAAAGAAGAAGAAACCGAAAAAGAAATCGAAGGCAGGCTGATTATCATCG
ATGAAATGTCGATGGTCGACACATGGCTTGCGCATCAACTGTTAAAAGCTGTACCCGAAGACGCCCAAATCATTTTTGTC
GGCGACCAGGACCAGCTGCCGCCAGTTGGGCCAGGTCAAGTGCTCCGCGACATGCTTGATTCAAAACGAATCCCGACGGT
CGAACTGAAAGACATTTACCGGCAATCTTCCGGTTCATCAATTATCGAACTCGCTCACCAAATGAAGAATGGCCAGCTTC
CGGCAGATATTACTGCTAAAACGGCAGACCGCTCGTTCATTAAAGCGGGAGCTGACCAAATTCCGTCAGTTGTTGAAAAA
GTCGTGAAAAGCGCATTGAGTAAAGGCCATTCCATTAAAGACATCCAGGTACTGGCGCCAATGTACAAAGGGCCGGCGGG
CATAGATGCCTTGAACCGGATGATCCAGGAAATGGTCAACCCGAATACCGACGGCAAGCGAAAAGAATTGGTGTTTGGCG
ACATCACGTACCGAATCGGCGACAAGATTCTGCAGCTCGTCAACCAGCCGGAAAGCAATGTGTTCAACGGCGATATGGGC
GAAGTTGTCGCCATTCTGAAAGCGAAAGAAACCGTCGAGAAACAAGACATGCTTGTGGCGTCGTTCGACGGCATCGAAGT
GACGTATGAGCGCAGCGACTTGAACCAATTGACGCTCGCGTATTGCTGCTCGATCCACAAAGCGCAAGGCTCGGAATTTC
CGACGGTTATTATGCCGGTTGTCCGCGGCTACATGAAAATGCTGCGCCGCAACCTGCTGTATACCGGCATCACTCGAAGC
AAAGACTTCTTGATTCTGTGCGGAGACCCGAGCGTCTTTCGTTTCGGCGTGGAACGCACCGACGATGCCAAGCGCATGAC
CACGCTGAAAGACCGACTTGCGAGATCAGAAGCAGAACCGGTTAAAGAAGCTGCCGAAGAAGAAGTTGGACCCGCGAGCT
TAACCGCCGATAACGCCCATGCAATCCACCCGTTGATTGGTATGGAAGGCGTTACGCCACGCGATTTTATGGAGGCATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)

AAA domain (AAA_30)

(343-551)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-727)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-652)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.045

99.374

0.557