Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QWY16_RS08060 Genome accession   NZ_CP129235
Coordinates   1621403..1623844 (+) Length   813 a.a.
NCBI ID   WP_300992521.1    Uniprot ID   -
Organism   Planococcus sp. N016     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1616403..1628844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWY16_RS08035 (QWY16_08035) - 1616587..1617873 (-) 1287 WP_300992516.1 replication-associated recombination protein A -
  QWY16_RS08040 (QWY16_08040) - 1618009..1618425 (+) 417 WP_300993342.1 Rrf2 family transcriptional regulator -
  QWY16_RS08045 (QWY16_08045) - 1618439..1619572 (+) 1134 WP_300992518.1 cysteine desulfurase family protein -
  QWY16_RS08050 (QWY16_08050) mnmA 1619587..1620705 (+) 1119 WP_300992520.1 tRNA 2-thiouridine(34) synthase MnmA -
  QWY16_RS08055 (QWY16_08055) - 1620720..1621379 (+) 660 WP_300993345.1 tetratricopeptide repeat protein -
  QWY16_RS08060 (QWY16_08060) recD2 1621403..1623844 (+) 2442 WP_300992521.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QWY16_RS08065 (QWY16_08065) alaS 1624371..1626995 (+) 2625 WP_300993348.1 alanine--tRNA ligase -
  QWY16_RS08070 (QWY16_08070) - 1627085..1627351 (+) 267 WP_300992522.1 IreB family regulatory phosphoprotein -
  QWY16_RS08075 (QWY16_08075) ruvX 1627354..1627770 (+) 417 WP_300992523.1 Holliday junction resolvase RuvX -
  QWY16_RS08080 (QWY16_08080) - 1627784..1628092 (+) 309 WP_300992525.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 813 a.a.        Molecular weight: 90731.05 Da        Isoelectric Point: 5.0281

>NTDB_id=851713 QWY16_RS08060 WP_300992521.1 1621403..1623844(+) (recD2) [Planococcus sp. N016]
MTGQIDLFHEEAQFVLGRPVVSIFHNPQNLFSIAKVKIQETNTSYPEKEIIVSGYFPKLSLEEQYRFTGAVKNHPKYGVQ
FQVKTFTKEVPETEQGIIHYLSSDMFNGIGRKTAETIVKKLGKEAIKKILEDPEALDAVPRLSDDKKDTIRSTLQMNLGL
ERVMIQLNDWGFGPQVGMRIYQAYREETIDILTKNPYRLIEEIEGIGFQRADELGAKLGITGSHPDRIKASILHLLNQAS
LSEGHVYVDAKTLIPLVKEMLEINPRDEIPIELISKAMIELNEEGKVAGEKTRLYLPSLYYSELGIATKLETMLASQAKR
ERFPASEVRRALGEAEERLEVNYAETQVEAIENSINSSVMILTGGPGTGKTTVVRGLVEVYAELHGLSLDPKDYAKKKEP
FPIILAAPTGRAAKRLSESTDLPAMTIHRLLGFNGQEKEEETERDIEGRLIIIDEMSMVDTWLAHQLLKAVPEDAQIIFV
GDQDQLPPVGPGQVLRDLLESKRIPTVELTDIYRQSSGSSIIELAHQMKVGQLPADITAKTADRSFIKAGPEQVPEVVEK
VVKSALAKGHSIKDIQVLAPMYKGPAGIDALNRMIQEMVNPNPDGKRKELVFGDISYRIGDKVLQLVNQPESNVFNGDMG
EVVAIMKAKETVEKQDMLVASFDGIEVEYQRSDLNQLTLAYCCSIHKAQGSEFPTVIMPVVRSYMKMLRRNLLYTGITRS
KDFLILCGDPQVFRYGVERTDDVQRMTTLRERLQLPEEETAAAETEAETKESTVASEKVKEPAGSVSLTAENANTIHPLI
GMEGIKPQDFLEA

Nucleotide


Download         Length: 2442 bp        

>NTDB_id=851713 QWY16_RS08060 WP_300992521.1 1621403..1623844(+) (recD2) [Planococcus sp. N016]
ATGACCGGACAAATTGATTTATTCCATGAAGAAGCACAATTCGTGTTAGGCCGGCCCGTCGTCTCGATTTTTCACAATCC
CCAAAATTTATTTTCCATCGCCAAAGTGAAAATCCAGGAAACCAACACCTCCTATCCAGAAAAGGAAATCATCGTTTCTG
GCTATTTCCCGAAACTGTCGCTTGAGGAACAATACCGTTTTACGGGGGCTGTGAAAAATCATCCGAAATATGGTGTTCAG
TTCCAAGTGAAAACTTTTACAAAAGAAGTTCCGGAAACCGAACAAGGAATCATCCATTATTTGTCGAGTGATATGTTCAA
TGGCATCGGCCGCAAAACAGCGGAGACGATTGTCAAAAAACTCGGTAAAGAGGCCATCAAAAAGATTCTGGAAGACCCGG
AAGCGCTCGATGCAGTGCCGCGTTTATCCGATGACAAAAAAGATACGATCCGCTCGACGCTGCAGATGAACCTGGGGCTG
GAGCGAGTCATGATCCAGTTGAATGACTGGGGATTCGGCCCTCAAGTCGGCATGCGCATTTACCAGGCGTACCGGGAAGA
AACGATCGATATTTTAACGAAGAACCCTTACCGGTTGATCGAAGAAATTGAAGGAATCGGGTTCCAGCGCGCCGATGAAC
TTGGCGCGAAACTCGGCATTACGGGAAGCCATCCGGACCGCATCAAAGCTTCGATTCTTCATTTATTGAACCAGGCTTCG
CTGTCGGAAGGCCATGTTTATGTCGATGCCAAAACGCTGATTCCGCTTGTTAAAGAAATGCTTGAAATCAATCCGCGAGA
TGAAATACCGATTGAATTGATTTCAAAAGCGATGATTGAATTGAATGAAGAAGGCAAAGTGGCAGGGGAAAAAACCCGGC
TTTATTTGCCGTCGCTTTATTATTCAGAACTGGGCATTGCAACGAAACTGGAAACGATGCTGGCTTCCCAAGCGAAGCGC
GAACGTTTTCCTGCCTCGGAAGTGCGGCGGGCGCTTGGGGAAGCGGAAGAACGGCTCGAGGTCAATTATGCCGAAACGCA
AGTGGAAGCCATTGAAAACAGCATCAACTCTTCGGTCATGATCTTGACCGGGGGGCCGGGAACCGGCAAAACGACGGTCG
TCCGCGGCTTGGTCGAAGTGTATGCCGAACTTCACGGCTTGTCGCTCGATCCAAAAGACTATGCCAAGAAAAAAGAGCCG
TTCCCCATCATTTTGGCGGCGCCAACAGGGCGGGCAGCGAAACGGCTCAGTGAATCGACGGACCTGCCAGCGATGACGAT
CCACCGTTTGCTCGGCTTTAATGGACAGGAAAAAGAAGAAGAAACCGAACGCGATATTGAAGGCCGGTTGATCATCATCG
ATGAAATGTCGATGGTTGATACGTGGCTGGCGCATCAATTGCTGAAAGCCGTTCCTGAAGATGCCCAGATCATTTTCGTC
GGGGACCAAGATCAATTGCCGCCAGTCGGGCCGGGCCAAGTGCTGCGCGATTTATTGGAATCAAAACGCATCCCGACCGT
CGAACTGACTGATATCTACCGGCAGTCCTCCGGATCATCGATCATTGAACTGGCCCACCAAATGAAAGTTGGCCAGTTGC
CGGCCGATATCACGGCGAAAACAGCGGACCGTTCGTTCATTAAAGCGGGACCTGAACAAGTTCCGGAAGTGGTCGAAAAA
GTAGTGAAAAGCGCTCTTGCTAAAGGCCATTCCATTAAAGACATCCAAGTGCTCGCGCCGATGTACAAAGGACCGGCCGG
CATTGATGCACTTAACCGCATGATCCAGGAAATGGTCAATCCGAATCCGGACGGCAAACGGAAAGAACTGGTTTTCGGCG
ATATCTCATACCGCATCGGCGATAAAGTTCTGCAGCTCGTCAACCAGCCGGAAAGCAATGTTTTTAATGGCGACATGGGG
GAAGTGGTCGCCATTATGAAAGCGAAAGAAACGGTCGAGAAGCAGGACATGCTGGTGGCTTCTTTTGACGGCATTGAAGT
GGAATACCAGCGCAGCGACTTGAACCAGCTGACGCTCGCGTATTGCTGCTCGATCCATAAAGCACAAGGCTCGGAATTTC
CGACGGTCATCATGCCCGTTGTCCGCAGCTATATGAAAATGCTGCGGCGCAATTTATTGTATACGGGAATCACGCGAAGC
AAAGATTTCCTGATTCTTTGCGGCGATCCGCAGGTGTTCCGCTACGGTGTTGAACGGACAGATGATGTCCAGCGCATGAC
CACATTAAGAGAACGGCTGCAGCTGCCTGAAGAAGAAACGGCTGCCGCGGAAACTGAAGCTGAAACAAAAGAGAGCACCG
TAGCCAGTGAAAAAGTTAAAGAACCGGCCGGCTCGGTGAGCTTGACGGCGGAAAACGCCAACACGATCCATCCGCTGATC
GGCATGGAAGGCATCAAGCCGCAGGATTTTCTCGAAGCGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-652)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-727)

AAA domain (AAA_30)

(343-550)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

54.963

99.139

0.545