Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   V6S42_RS01375 Genome accession   NZ_CP145646
Coordinates   311952..312716 (-) Length   254 a.a.
NCBI ID   WP_001136211.1    Uniprot ID   -
Organism   Escherichia coli strain S1-IND-02-A     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 306952..317716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6S42_RS01350 (V6S42_01350) yhhJ 308795..309919 (+) 1125 WP_001314210.1 ABC transporter permease -
  V6S42_RS01355 (V6S42_01355) - 309992..310267 (+) 276 Protein_268 type II toxin-antitoxin system HicA family toxin -
  V6S42_RS01360 (V6S42_01360) - 310264..310623 (+) 360 WP_000593555.1 type II toxin-antitoxin system HicB family antitoxin -
  V6S42_RS01365 (V6S42_01365) nikR 310743..311144 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  V6S42_RS01370 (V6S42_01370) nikE 311149..311955 (-) 807 WP_000173690.1 nickel import ATP-binding protein NikE -
  V6S42_RS01375 (V6S42_01375) amiE 311952..312716 (-) 765 WP_001136211.1 nickel import ATP-binding protein NikD Regulator
  V6S42_RS01380 (V6S42_01380) nikC 312716..313549 (-) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  V6S42_RS01385 (V6S42_01385) nikB 313546..314490 (-) 945 WP_000947080.1 nickel ABC transporter permease subunit NikB -
  V6S42_RS01390 (V6S42_01390) nikA 314490..316064 (-) 1575 WP_022646227.1 nickel ABC transporter substrate-binding protein -
  V6S42_RS01395 (V6S42_01395) acpT 316175..316762 (-) 588 WP_000285789.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26812.45 Da        Isoelectric Point: 6.9016

>NTDB_id=851490 V6S42_RS01375 WP_001136211.1 311952..312716(-) (amiE) [Escherichia coli strain S1-IND-02-A]
MPQQIELRNIALQAAQPLVHGVSLTLKRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGDVETLFNAPKHAVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=851490 V6S42_RS01375 WP_001136211.1 311952..312716(-) (amiE) [Escherichia coli strain S1-IND-02-A]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTTAA
ACGCGGGCGTGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCACTGACCTGCGCCGCGACGCTGGGCATTCTGC
CCGCAGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCTCCCTGTGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGTGCCTTTAATCCGCTTCACACCATGCACACCCACGCGCGGGAAACCTGCCT
GGCGCTGGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCACGCGTGC
TGAAGCTGTACCCGTTTGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGTTGTGTGAATCGCCG
TTTATCATCGCCGATGAACCGACCACCGATCTCGACGTGGTAGCACAGGCGCGCATTCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCACCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCACACGGTAAAATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAATGCCCCCAAACATGCGGTAACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398