Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   LLD17_RS11725 Genome accession   NZ_CP129182
Coordinates   2141833..2142771 (-) Length   312 a.a.
NCBI ID   WP_021165031.1    Uniprot ID   A0AAD1NII7
Organism   Lactococcus cremoris strain D.1.7     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2136833..2147771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLD17_RS11700 (LLD17_11745) frr 2137012..2137569 (-) 558 WP_011677081.1 ribosome recycling factor -
  LLD17_RS11705 (LLD17_11750) pyrH 2137725..2138441 (-) 717 WP_021464089.1 UMP kinase -
  LLD17_RS11710 (LLD17_11755) - 2138526..2138978 (-) 453 WP_282668012.1 hypothetical protein -
  LLD17_RS11715 (LLD17_11760) - 2139108..2140295 (-) 1188 WP_014573258.1 acetate kinase -
  LLD17_RS11720 (LLD17_11765) - 2140454..2141641 (-) 1188 WP_011677084.1 acetate kinase -
  LLD17_RS11725 (LLD17_11770) comYH 2141833..2142771 (-) 939 WP_021165031.1 class I SAM-dependent methyltransferase Machinery gene
  LLD17_RS11730 (LLD17_11775) - 2142859..2143110 (-) 252 WP_011677086.1 DUF3165 family protein -
  LLD17_RS11735 (LLD17_11780) typA 2143211..2145043 (-) 1833 WP_031286284.1 translational GTPase TypA -
  LLD17_RS11745 (LLD17_11790) - 2146732..2146920 (-) 189 Protein_2145 hypothetical protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34710.68 Da        Isoelectric Point: 4.3603

>NTDB_id=851406 LLD17_RS11725 WP_021165031.1 2141833..2142771(-) (comYH) [Lactococcus cremoris strain D.1.7]
MNMEKVAQGFELVVENITKLSEKLDTDFYDAFVEQNAAFLDGTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQANHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
YAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVSKNFEVAATDGHTFAHHLLIEQSFNYLKDGAFAVFLAPEDLLTSV
QGPLLKEWISQHGSIMAVITLPSSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRESLEIFMEEFTKTVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=851406 LLD17_RS11725 WP_021165031.1 2141833..2142771(-) (comYH) [Lactococcus cremoris strain D.1.7]
ATGAACATGGAAAAAGTGGCTCAAGGTTTTGAGCTGGTAGTTGAAAATATTACAAAATTATCTGAGAAATTAGATACAGA
TTTTTATGATGCTTTTGTGGAACAAAATGCTGCTTTTTTAGATGGTACTGACCAAGGAATTGTTGAGCTGTCAGTAAATA
ATGACAAACTCCGTCAGTTAAATTTATCAAACAAAGAATGGCAAAAACTTTTTCAATTTGTTTTATTAAAAGGTTCGCAA
GTTGCGCCTCTTCAGGCAAATCATGCCATGACTCCTGATGCAATTGGTCTAATTTTCAACTTTATCATTGAACATCTCAA
TAAAAATTCTGAACTTCGATTAATTGAGTTTGGTTCTGGTATGGGTAATCTTGCGGAAACATTGCTTGTTAATCTTAATA
AAAAAGTAGATTATGTTGGTTTTGAAGTCGATGATTTACTTTTAGATTTGTCAGCTTCAATGGCTGAAATCATGGGAAGC
TATGCCGAATTTATGCAAATTGATGCGGTTCAAAAACGGTTGATGGAGCCAGCTGATGTTGTTGTTAGTGATTTGCCAAT
CGGTTTTTATCCAGATGATGAAGTTTCGAAAAATTTTGAAGTCGCTGCTACTGATGGACACACCTTTGCACATCATTTGT
TGATTGAACAATCATTTAATTACTTGAAAGATGGTGCTTTTGCAGTTTTCTTAGCACCGGAGGATTTACTGACAAGTGTA
CAAGGCCCACTTTTAAAAGAGTGGATTAGTCAGCATGGAAGTATTATGGCGGTAATTACTTTACCAAGCTCACTTTTTAA
TGCTGATGCTAAAGCAATTTATGTCTTGAAAAAAGGGCCTGCTGCTCATGCGACCTTTGCTCATCCTTTGTCATCATTGA
CAGACAGAGAAAGTTTAGAAATCTTTATGGAAGAATTTACAAAAACTGTAAAGTTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

48.882

100

0.49
  comYH Streptococcus mutans UA159

48.562

100

0.487