Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LLD17_RS01685 Genome accession   NZ_CP129182
Coordinates   177899..178687 (+) Length   262 a.a.
NCBI ID   WP_282667947.1    Uniprot ID   -
Organism   Lactococcus cremoris strain D.1.7     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 172899..183687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLD17_RS01660 (LLD17_01665) - 173210..173995 (+) 786 WP_014571883.1 DNA/RNA non-specific endonuclease -
  LLD17_RS01665 (LLD17_01670) - 174164..174373 (+) 210 WP_014571884.1 hypothetical protein -
  LLD17_RS01670 (LLD17_01675) - 174385..174624 (+) 240 WP_011675217.1 hypothetical protein -
  LLD17_RS01675 (LLD17_01680) - 174822..176402 (+) 1581 WP_081196433.1 glycosyltransferase -
  LLD17_RS01680 (LLD17_01685) - 176532..177746 (+) 1215 WP_011675219.1 pyridoxal phosphate-dependent aminotransferase -
  LLD17_RS01685 (LLD17_01690) codY 177899..178687 (+) 789 WP_282667947.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LLD17_RS01690 (LLD17_01695) gatC 178965..179270 (+) 306 WP_011675221.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  LLD17_RS01695 (LLD17_01700) gatA 179270..180730 (+) 1461 WP_014571887.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  LLD17_RS01700 (LLD17_01705) gatB 180755..182188 (+) 1434 WP_011675223.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29186.54 Da        Isoelectric Point: 4.5254

>NTDB_id=851374 LLD17_RS01685 WP_282667947.1 177899..178687(+) (codY) [Lactococcus cremoris strain D.1.7]
MATLLEKTRKITVILQDGVTDLQQELPYNSMTERLANVIDCNACVINTKGELLGYSLPYNTNNDRVDQFFYDRKLPDEYV
RAAVRIYDTMANVPVDRPLAIFPEESLSDFPKGVTTLAPIYGSGMRLGTFIMWREDGEFTDDDLVLVELATTVIGVQLSN
LKLEQMEENIRKDTMATMAVNTLSYSEMKAVKAIIEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSLG
MKGTYLKVLNTGLFDKLAGRNF

Nucleotide


Download         Length: 789 bp        

>NTDB_id=851374 LLD17_RS01685 WP_282667947.1 177899..178687(+) (codY) [Lactococcus cremoris strain D.1.7]
GTGGCTACATTACTTGAAAAAACACGTAAAATCACGGTGATTTTGCAAGATGGAGTGACCGATTTGCAACAAGAGTTGCC
ATACAACAGTATGACTGAACGCTTGGCAAACGTCATTGATTGCAACGCCTGCGTGATTAATACGAAGGGCGAGTTGCTTG
GTTACTCATTGCCTTACAATACAAACAATGATCGCGTTGACCAATTTTTCTACGATCGTAAATTGCCTGACGAATACGTT
CGTGCAGCAGTACGTATTTACGATACAATGGCAAACGTTCCTGTTGATCGTCCTTTAGCAATTTTCCCAGAAGAAAGTCT
TAGCGATTTTCCAAAAGGTGTAACAACTTTAGCGCCTATCTATGGTTCTGGAATGCGTCTTGGAACATTTATTATGTGGC
GCGAAGATGGTGAATTTACAGATGACGATCTTGTTTTGGTTGAGCTTGCAACAACAGTAATCGGTGTACAACTCTCAAAC
CTTAAACTTGAACAAATGGAAGAAAATATCCGTAAAGACACTATGGCAACAATGGCTGTTAATACACTTTCTTACTCAGA
AATGAAAGCTGTCAAAGCAATTATTGAAGAACTTGATGGTGAAGAAGGGCATGTTATTGCCTCTGTCATTGCTGACAAGA
TTGGTATTACACGTTCAGTGATTGTTAATGCTTTACGTAAACTGGAATCTGCTGGTGTTATTGAATCACGTTCACTTGGT
ATGAAAGGAACTTATCTTAAAGTTCTTAATACTGGTTTGTTTGATAAACTTGCTGGACGTAATTTCTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(201-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

99.237

100

0.992
  codY Bacillus subtilis subsp. subtilis str. 168

47.451

97.328

0.462