Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   LLUC029_RS11240 Genome accession   NZ_CP129163
Coordinates   2155717..2156655 (-) Length   312 a.a.
NCBI ID   WP_032951195.1    Uniprot ID   A0A1V0PEP2
Organism   Lactococcus cremoris strain UC029     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2150717..2161655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC029_RS11215 (LLUC029_11245) frr 2150896..2151453 (-) 558 WP_011677081.1 ribosome recycling factor -
  LLUC029_RS11220 (LLUC029_11250) pyrH 2151609..2152325 (-) 717 WP_004254608.1 UMP kinase -
  LLUC029_RS11225 (LLUC029_11255) - 2152410..2152862 (-) 453 WP_021165032.1 hypothetical protein -
  LLUC029_RS11230 (LLUC029_11260) - 2152992..2154179 (-) 1188 WP_032951192.1 acetate kinase -
  LLUC029_RS11235 (LLUC029_11265) - 2154338..2155525 (-) 1188 WP_011677084.1 acetate kinase -
  LLUC029_RS11240 (LLUC029_11270) comYH 2155717..2156655 (-) 939 WP_032951195.1 class I SAM-dependent methyltransferase Machinery gene
  LLUC029_RS11245 (LLUC029_11275) - 2156743..2156994 (-) 252 WP_011677086.1 DUF3165 family protein -
  LLUC029_RS11250 (LLUC029_11280) typA 2157095..2158927 (-) 1833 WP_031286284.1 translational GTPase TypA -
  LLUC029_RS11255 - 2159104..2159577 (-) 474 WP_032951197.1 hypothetical protein -
  LLUC029_RS11260 (LLUC029_11285) - 2160078..2160968 (+) 891 WP_396425048.1 IS982 family transposase -
  LLUC029_RS11265 (LLUC029_11290) - 2161029..2161487 (-) 459 WP_021165027.1 hypothetical protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34692.65 Da        Isoelectric Point: 4.3603

>NTDB_id=851357 LLUC029_RS11240 WP_032951195.1 2155717..2156655(-) (comYH) [Lactococcus cremoris strain UC029]
MNMEKVAQGFELVVENITKLSEKLDTDFYDAFVEQNAAFLDGTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQANHALTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
YAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVSKNFEVAATDGHTFAHHLLIEQSFNYLKDGAFAVFLAPEDLLTSV
QGPLLKEWISQHGSIMAVITLPSSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRESLEIFMEEFTKTVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=851357 LLUC029_RS11240 WP_032951195.1 2155717..2156655(-) (comYH) [Lactococcus cremoris strain UC029]
ATGAACATGGAAAAAGTGGCTCAAGGTTTTGAGCTGGTAGTTGAAAATATTACAAAATTATCTGAGAAATTAGATACAGA
TTTTTATGATGCTTTTGTGGAACAAAATGCTGCTTTTTTAGATGGTACTGACCAAGGAATTGTTGAGCTGTCAGTAAATA
ATGACAAACTCCGTCAGTTAAATTTATCAAATAAAGAATGGCAAAAACTTTTTCAATTTGTTTTATTAAAAGGTTCGCAA
GTTGCGCCTCTTCAGGCAAATCATGCCCTGACTCCTGATGCAATTGGTCTAATTTTCAACTTTATCATTGAACATCTCAA
TAAAAATTCTGAACTTCGATTAATTGAGTTTGGTTCTGGTATGGGTAATCTTGCGGAAACATTGCTTGTTAATCTTAATA
AAAAAGTAGATTATGTTGGTTTTGAAGTCGATGATTTACTTTTAGATTTGTCAGCTTCAATGGCTGAAATCATGGGAAGC
TATGCCGAATTTATGCAAATTGATGCGGTTCAAAAACGGTTGATGGAGCCAGCTGATGTTGTTGTTAGTGATTTGCCAAT
CGGTTTTTATCCAGATGATGAAGTTTCGAAAAATTTTGAAGTCGCTGCTACTGATGGACACACCTTTGCACATCATTTGT
TGATTGAACAATCATTTAATTACTTGAAAGATGGTGCTTTTGCAGTTTTCTTAGCACCGGAGGATTTACTGACAAGTGTA
CAAGGCCCACTTTTAAAAGAATGGATTAGTCAGCATGGAAGTATTATGGCGGTAATTACTTTACCAAGCTCACTTTTTAA
TGCTGATGCTAAAGCAATTTATGTCTTGAAAAAAGGGCCTGCTGCTCATGCGACCTTTGCTCATCCTTTGTCATCATTGA
CAGACAGAGAAAGTTTAGAAATCTTTATGGAAGAATTTACAAAAACTGTAAAGTTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V0PEP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

48.882

100

0.49
  comYH Streptococcus mutans UA159

48.562

100

0.487