Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LLUC029_RS00885 Genome accession   NZ_CP129163
Coordinates   169769..170557 (+) Length   262 a.a.
NCBI ID   WP_011834262.1    Uniprot ID   A0A0M2ZTB8
Organism   Lactococcus cremoris strain UC029     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 164769..175557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC029_RS00860 (LLUC029_00865) - 165080..165865 (+) 786 WP_014571883.1 DNA/RNA non-specific endonuclease -
  LLUC029_RS00865 (LLUC029_00870) - 166034..166243 (+) 210 WP_032950730.1 hypothetical protein -
  LLUC029_RS00870 (LLUC029_00875) - 166255..166494 (+) 240 WP_011675217.1 hypothetical protein -
  LLUC029_RS00875 (LLUC029_00880) - 166692..168272 (+) 1581 WP_032950732.1 glycosyl transferase -
  LLUC029_RS00880 (LLUC029_00885) - 168402..169616 (+) 1215 WP_011675219.1 pyridoxal phosphate-dependent aminotransferase -
  LLUC029_RS00885 (LLUC029_00890) codY 169769..170557 (+) 789 WP_011834262.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LLUC029_RS00890 (LLUC029_00895) gatC 170835..171140 (+) 306 WP_011675221.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  LLUC029_RS00895 (LLUC029_00900) gatA 171140..172600 (+) 1461 WP_014571887.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  LLUC029_RS00900 (LLUC029_00905) gatB 172625..174058 (+) 1434 WP_011675223.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29158.48 Da        Isoelectric Point: 4.5254

>NTDB_id=851322 LLUC029_RS00885 WP_011834262.1 169769..170557(+) (codY) [Lactococcus cremoris strain UC029]
MATLLEKTRKITAILQDGVTDLQQELPYNSMTERLANVIDCNACVINTKGELLGYSLPYNTNNDRVDQFFYDRKLPDEYV
RAAVRIYDTMANVPVDRPLAIFPEESLSDFPKGVTTLAPIYGSGMRLGTFIMWREDGEFTDDDLVLVELATTVIGVQLSN
LKLEQMEENIRKDTMATMAVNTLSYSEMKAVKAIIEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSLG
MKGTYLKVLNTGLFDKLAGRNF

Nucleotide


Download         Length: 789 bp        

>NTDB_id=851322 LLUC029_RS00885 WP_011834262.1 169769..170557(+) (codY) [Lactococcus cremoris strain UC029]
GTGGCTACATTACTTGAAAAAACACGTAAAATCACCGCGATTTTGCAAGATGGAGTGACCGATTTGCAACAAGAGTTGCC
ATACAACAGTATGACTGAACGCTTGGCAAACGTCATTGATTGCAACGCCTGCGTGATTAATACGAAGGGCGAGTTGCTTG
GTTACTCATTGCCTTACAATACAAACAATGATCGCGTTGACCAATTTTTCTACGATCGTAAATTGCCTGACGAATACGTT
CGTGCAGCAGTACGTATTTACGATACAATGGCAAACGTTCCTGTTGATCGTCCTTTAGCAATTTTCCCAGAAGAAAGTCT
TAGCGATTTTCCAAAAGGTGTAACAACTTTAGCGCCTATCTATGGTTCTGGAATGCGTCTTGGAACATTTATTATGTGGC
GCGAAGATGGTGAATTTACAGATGACGATCTTGTTTTGGTTGAGCTTGCAACAACAGTAATCGGTGTACAACTCTCAAAC
CTTAAACTTGAACAAATGGAAGAAAATATCCGTAAAGACACTATGGCAACAATGGCTGTTAATACACTTTCTTACTCAGA
AATGAAAGCTGTCAAAGCAATTATTGAAGAACTTGATGGTGAAGAAGGGCATGTTATTGCCTCTGTCATTGCTGACAAGA
TTGGTATTACACGTTCAGTGATTGTTAATGCTTTACGTAAACTGGAATCTGCTGGTGTTATTGAATCACGTTCACTTGGT
ATGAAAGGAACTTATCTTAAAGTTCTTAATACTGGTTTGTTTGATAAACTTGCTGGACGTAATTTCTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(201-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M2ZTB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

99.618

100

0.996
  codY Bacillus subtilis subsp. subtilis str. 168

47.638

96.947

0.462