Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QWI19_RS08675 Genome accession   NZ_CP129123
Coordinates   1664186..1664965 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain 6D1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1659186..1669965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWI19_RS08655 trmFO 1659879..1661186 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QWI19_RS08660 xerC 1661254..1662168 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  QWI19_RS08665 clpQ 1662181..1662726 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  QWI19_RS08670 hslU 1662743..1664146 (+) 1404 WP_015252099.1 HslU--HslV peptidase ATPase subunit -
  QWI19_RS08675 codY 1664186..1664965 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QWI19_RS08680 flgB 1665345..1665734 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  QWI19_RS08685 flgC 1665734..1666186 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  QWI19_RS08690 fliE 1666197..1666517 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  QWI19_RS08695 fliF 1666563..1668173 (+) 1611 WP_010886506.1 flagellar basal-body MS-ring/collar protein FliF -
  QWI19_RS08700 fliG 1668186..1669202 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  QWI19_RS08705 fliH 1669195..1669947 (+) 753 WP_044052687.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=851200 QWI19_RS08675 WP_003220850.1 1664186..1664965(+) (codY) [Bacillus subtilis strain 6D1]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=851200 QWI19_RS08675 WP_003220850.1 1664186..1664965(+) (codY) [Bacillus subtilis strain 6D1]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467