Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   V6S47_RS11955 Genome accession   NZ_CP145622
Coordinates   2457512..2458276 (+) Length   254 a.a.
NCBI ID   WP_001136232.1    Uniprot ID   Q0TBX9
Organism   Escherichia coli strain S1-ESP-02-A     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2452512..2463276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6S47_RS11935 (V6S47_11935) acpT 2453466..2454053 (+) 588 WP_000285790.1 4'-phosphopantetheinyl transferase AcpT -
  V6S47_RS11940 (V6S47_11940) nikA 2454164..2455738 (+) 1575 WP_000493122.1 nickel ABC transporter substrate-binding protein -
  V6S47_RS11945 (V6S47_11945) nikB 2455738..2456682 (+) 945 WP_000947070.1 nickel ABC transporter permease subunit NikB -
  V6S47_RS11950 (V6S47_11950) nikC 2456679..2457512 (+) 834 WP_001008955.1 nickel ABC transporter permease subunit NikC -
  V6S47_RS11955 (V6S47_11955) amiE 2457512..2458276 (+) 765 WP_001136232.1 nickel import ATP-binding protein NikD Regulator
  V6S47_RS11960 (V6S47_11960) nikE 2458273..2459079 (+) 807 WP_000173679.1 nickel import ATP-binding protein NikE -
  V6S47_RS11965 (V6S47_11965) nikR 2459085..2459486 (+) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  V6S47_RS11970 (V6S47_11970) yhhJ 2459495..2460619 (-) 1125 WP_001314210.1 ABC transporter permease -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26812.40 Da        Isoelectric Point: 6.6882

>NTDB_id=851096 V6S47_RS11955 WP_001136232.1 2457512..2458276(+) (amiE) [Escherichia coli strain S1-ESP-02-A]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGDVETLFNAPKHAVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=851096 V6S47_RS11955 WP_001136232.1 2457512..2458276(+) (amiE) [Escherichia coli strain S1-ESP-02-A]
ATGCCACAACAGATTGAACTCCGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTGCA
ACGTGGGCGTGTGCTGGCGTTAGTCGGCGGTAGTGGCAGCGGGAAGTCGCTGACCTGCGCCGCGACGCTGGGCATTCTGC
CTGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTGGCCGATGGAAAACCGGTTTCTCCCTGCGCCCTGCGCGGAATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGTGCCTTTAATCCGCTGCACACCATGCACACCCACGCGCGTGAAACCTGCCT
GGCGCTGGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTCTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGCGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGATCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCACCGGGAATGCTGCTGGTTACCCATGATATGGGCGTGGTAGCGCGTCTGGCAGACGATGTGGCGGTAA
TGTCTCACGGTAAGATTGTTGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATGCGGTAACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0TBX9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398