Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   QU610_RS07590 Genome accession   NZ_CP129105
Coordinates   1570627..1570911 (-) Length   94 a.a.
NCBI ID   WP_000413637.1    Uniprot ID   A0AB72ZV75
Organism   Helicobacter pylori strain HP45k     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1565627..1575911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU610_RS07565 (QU610_07565) - 1566232..1567398 (-) 1167 WP_137296701.1 VirB8/TrbF family protein -
  QU610_RS07570 (QU610_07570) - 1567391..1567531 (-) 141 WP_120899888.1 type IV secretion system protein VirB7 -
  QU610_RS07575 (QU610_07575) - 1567528..1570104 (-) 2577 WP_137296702.1 VirB4 family type IV secretion/conjugal transfer ATPase -
  QU610_RS07580 (QU610_07580) - 1570104..1570340 (-) 237 WP_001168532.1 hypothetical protein -
  QU610_RS07585 (QU610_07585) comB3 1570352..1570615 (-) 264 WP_001177716.1 hypothetical protein Machinery gene
  QU610_RS07590 (QU610_07590) comB2 1570627..1570911 (-) 285 WP_000413637.1 TrbC/VirB2 family protein Machinery gene
  QU610_RS07595 (QU610_07595) - 1570889..1571413 (-) 525 WP_249351088.1 hypothetical protein -
  QU610_RS07600 (QU610_07600) - 1571494..1572282 (-) 789 WP_001140579.1 hypothetical protein -
  QU610_RS07605 (QU610_07605) - 1572335..1572856 (-) 522 Protein_1477 restriction endonuclease subunit S -
  QU610_RS07610 (QU610_07610) - 1572844..1573620 (-) 777 WP_137296705.1 CAAX protease -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10753.05 Da        Isoelectric Point: 10.7837

>NTDB_id=850879 QU610_RS07590 WP_000413637.1 1570627..1570911(-) (comB2) [Helicobacter pylori strain HP45k]
MEKLRHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=850879 QU610_RS07590 WP_000413637.1 1570627..1570911(-) (comB2) [Helicobacter pylori strain HP45k]
ATGGAAAAATTAAGGCATTTTAGAAAGCTTATCGCCTTTTTAGGTTTTTCACCTCTTTTATTACAAGCGGATATGACTAC
CTTTTTTAATTCCATTGAACAACAGCTCACTAGCCCTACGGCTAAAGGCATTTTAATGGTTATTTTTTTAGGACTTGCTA
TTTTTATATGGAAAAACTTAGATAGATGGAAAGAAATTTTAATGACCGTGCTTGCTATTGCAATTGGTGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAACTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.778

95.745

0.553