Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   QU610_RS00095 Genome accession   NZ_CP129105
Coordinates   13780..14043 (+) Length   87 a.a.
NCBI ID   WP_137296268.1    Uniprot ID   -
Organism   Helicobacter pylori strain HP45k     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8780..19043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU610_RS00070 (QU610_00070) groES 9062..9418 (-) 357 WP_000671934.1 co-chaperone GroES -
  QU610_RS00075 (QU610_00075) dnaG 9704..11383 (+) 1680 WP_137296271.1 DNA primase -
  QU610_RS00080 (QU610_00080) - 11380..12432 (+) 1053 WP_137296270.1 MnmA/TRMU family protein -
  QU610_RS00085 (QU610_00085) - 12525..13352 (+) 828 WP_137296269.1 DUF5718 family protein -
  QU610_RS00090 (QU610_00090) comB2 13499..13780 (+) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  QU610_RS00095 (QU610_00095) comB3 13780..14043 (+) 264 WP_137296268.1 competence protein ComB Machinery gene
  QU610_RS00100 (QU610_00100) comB4 14045..16408 (+) 2364 WP_137296267.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  QU610_RS00110 (QU610_00110) - 16729..18069 (+) 1341 WP_170961792.1 COG3014 family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10052.10 Da        Isoelectric Point: 9.5290

>NTDB_id=850859 QU610_RS00095 WP_137296268.1 13780..14043(+) (comB3) [Helicobacter pylori strain HP45k]
MIILSSSVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDITDIIVAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=850859 QU610_RS00095 WP_137296268.1 13780..14043(+) (comB3) [Helicobacter pylori strain HP45k]
ATGATTATCCTCTCATCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCACCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTACAGATATTATTGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

97.701

100

0.977