Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LC071_RS22765 Genome accession   NZ_CP129020
Coordinates   3443634..3443747 (+) Length   37 a.a.
NCBI ID   WP_370314471.1    Uniprot ID   -
Organism   Pseudalkalibacillus hwajinpoensis strain KcN21-2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3438634..3448747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC071_RS17630 (LC071_17630) - 3439267..3440955 (-) 1689 WP_226616645.1 M20/M25/M40 family metallo-hydrolase -
  LC071_RS17635 (LC071_17635) - 3441162..3441839 (+) 678 WP_226616644.1 GntR family transcriptional regulator -
  LC071_RS17640 (LC071_17640) - 3441902..3442630 (+) 729 WP_226616643.1 hypothetical protein -
  LC071_RS22760 - 3443378..3443557 (+) 180 Protein_3435 sigma 54-interacting transcriptional regulator -
  LC071_RS22765 pilR 3443634..3443747 (+) 114 WP_370314471.1 hypothetical protein Regulator
  LC071_RS17655 (LC071_17655) - 3443866..3444222 (+) 357 WP_306109154.1 hypothetical protein -
  LC071_RS17660 (LC071_17660) - 3444300..3445199 (-) 900 WP_226616640.1 helix-turn-helix transcriptional regulator -
  LC071_RS17665 (LC071_17665) - 3445346..3446113 (+) 768 WP_306109155.1 hypothetical protein -
  LC071_RS17670 (LC071_17670) secD 3446706..3447962 (+) 1257 WP_226616638.1 protein translocase subunit SecD -
  LC071_RS17675 (LC071_17675) - 3448088..3448453 (-) 366 WP_226616637.1 PepSY domain-containing protein -

Sequence

Protein


Download         Length: 37 a.a.        Molecular weight: 4564.40 Da        Isoelectric Point: 10.4292

>NTDB_id=850658 LC071_RS22765 WP_370314471.1 3443634..3443747(+) (pilR) [Pseudalkalibacillus hwajinpoensis strain KcN21-2]
MRDGSFRQDLYYRLNILPLQTMPLRDRKKDILPLIHH

Nucleotide


Download         Length: 114 bp        

>NTDB_id=850658 LC071_RS22765 WP_370314471.1 3443634..3443747(+) (pilR) [Pseudalkalibacillus hwajinpoensis strain KcN21-2]
GTGAGAGATGGATCATTCAGACAGGACCTATACTACCGCTTAAATATCCTTCCTCTTCAAACCATGCCGCTGAGAGATCG
TAAAAAAGACATTCTTCCGCTTATTCACCATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.5

86.486

0.541
  pilR Acinetobacter baumannii strain A118

45.946

100

0.459
  luxO Vibrio cholerae strain A1552

44.444

97.297

0.432