Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   LC071_RS04765 Genome accession   NZ_CP129020
Coordinates   930930..933200 (-) Length   756 a.a.
NCBI ID   WP_226614494.1    Uniprot ID   -
Organism   Pseudalkalibacillus hwajinpoensis strain KcN21-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 925930..938200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC071_RS04745 (LC071_04745) - 926127..926390 (-) 264 WP_048312684.1 IreB family regulatory phosphoprotein -
  LC071_RS04750 (LC071_04750) alaS 926470..929103 (-) 2634 WP_226614491.1 alanine--tRNA ligase -
  LC071_RS04755 (LC071_04755) - 929479..930534 (-) 1056 WP_226614492.1 AI-2E family transporter -
  LC071_RS04760 (LC071_04760) - 930564..930752 (-) 189 WP_194219443.1 hypothetical protein -
  LC071_RS04765 (LC071_04765) recD2 930930..933200 (-) 2271 WP_226614494.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LC071_RS04770 (LC071_04770) - 933228..933896 (-) 669 WP_226614495.1 tetratricopeptide repeat protein -
  LC071_RS04775 (LC071_04775) mnmA 934006..935121 (-) 1116 WP_226614496.1 tRNA 2-thiouridine(34) synthase MnmA -
  LC071_RS04780 (LC071_04780) - 935166..936308 (-) 1143 WP_226614497.1 cysteine desulfurase family protein -
  LC071_RS04785 (LC071_04785) cymR 936346..936765 (-) 420 WP_160918687.1 cysteine metabolism transcriptional regulator CymR -
  LC071_RS04790 (LC071_04790) - 936698..937405 (-) 708 WP_306109403.1 YitT family protein -

Sequence

Protein


Download         Length: 756 a.a.        Molecular weight: 85538.41 Da        Isoelectric Point: 4.7670

>NTDB_id=850621 LC071_RS04765 WP_226614494.1 930930..933200(-) (recD2) [Pseudalkalibacillus hwajinpoensis strain KcN21-2]
MDQPQKGYIKGRPIQMIFFNEDSLYGVARLRISETNEPYDEKEVVVNGMIPRLLEDETYVFYGRFTDHPRYGKQYAVESF
ERQMPESKPGLIQYLSSDLFHGIGEKTAESIVDVLGERAIAKIMRDPSILSKVPKLSEEKAKGLYDTLMEHQGLDQIMIR
LTELGFGPRLSMKIFKAYKQETLEIVEKNPYQLIQDVEGIGFRRADDLGRSIGIEGKHPDRIRAACLHTLNEQTLQEGHV
YLEYDALIQSVNELLGDKLDEADISRELISLYESDKLILDRERIYLHSLYYAEKGLVTGLNNVMSQTEYADSFPESEFYR
ALGDLEERLGIQYAPSQREAVQKAIASPFMILTGGPGTGKTTVIKGIVELYAELNGLSLEPKDYSKDKPFPVLLVAPTGR
AAKRMSEATGLPAFTIHRLLGWKGEAGFEHDENNPIEGRLLIVDEVSMVDVWLANQLFKSLPSQIQVIVVGDEDQLPSVG
PGQVLKDMIDSHAVPVSKLTDIYRQAEGSSIIDLAHSIKEGELPEEFRKPTPDRRFFPCSQAQIIEVVSQVCGNALKKGY
SPRDIQVLAPMYRGSAGVDRLNQELQKLFNPATEQRRELLHGDLVYRVGDKVLQLVNNPEDNVYNGDMGEVVSVFFAKEN
IEKQDQLVVSFDGQEVVYDRPDFNQLTHAYCCSIHKSQGSEFPIVVLPIVRGYYRMLRKNLLYTAVTRSKDYLILCGEEE
AIKLAIQTEDDQVRNTQLTEKLQEMIGEQKTIEESM

Nucleotide


Download         Length: 2271 bp        

>NTDB_id=850621 LC071_RS04765 WP_226614494.1 930930..933200(-) (recD2) [Pseudalkalibacillus hwajinpoensis strain KcN21-2]
ATGGATCAGCCACAAAAAGGGTATATCAAAGGAAGACCCATTCAAATGATTTTTTTTAATGAAGATAGTTTGTATGGAGT
GGCAAGGCTTCGGATTTCTGAAACGAACGAACCTTATGATGAGAAAGAAGTCGTCGTGAACGGAATGATTCCTCGACTTC
TGGAAGATGAGACGTATGTATTTTACGGACGCTTTACCGATCATCCCCGTTATGGGAAACAGTATGCTGTTGAATCATTT
GAGAGACAGATGCCTGAATCAAAGCCAGGGCTTATCCAATACTTATCTAGTGATTTATTCCATGGAATTGGTGAAAAGAC
AGCTGAATCGATTGTTGATGTGTTAGGTGAGCGGGCCATAGCTAAAATTATGCGTGATCCATCAATATTAAGTAAGGTTC
CAAAGCTATCTGAAGAAAAAGCAAAGGGACTATATGATACTCTAATGGAGCATCAGGGGCTTGACCAAATTATGATTCGA
TTAACTGAGTTAGGATTTGGACCGAGACTATCGATGAAAATTTTTAAAGCCTATAAGCAAGAAACGCTCGAAATTGTTGA
GAAAAATCCATATCAACTTATTCAAGATGTGGAAGGTATTGGTTTTCGACGTGCGGATGATTTAGGGAGATCGATTGGTA
TTGAAGGAAAGCATCCTGATCGCATTCGGGCAGCATGTCTTCATACGTTAAATGAACAAACGTTACAGGAGGGACATGTG
TATCTTGAATACGATGCATTGATTCAATCTGTGAATGAGTTACTAGGTGATAAGCTTGATGAAGCAGATATTTCAAGGGA
ACTGATCTCTCTTTACGAGAGTGATAAATTGATTCTTGATCGAGAGAGAATCTATTTACATTCACTTTACTATGCTGAAA
AAGGTCTTGTGACTGGATTAAATAATGTGATGTCACAAACGGAGTATGCTGACTCTTTTCCGGAATCTGAATTCTATCGC
GCTCTAGGAGACCTTGAAGAACGACTTGGTATTCAATACGCTCCCTCACAGCGTGAAGCGGTACAAAAAGCAATCGCTTC
TCCGTTTATGATTTTAACTGGCGGACCAGGTACGGGGAAAACCACGGTTATTAAAGGGATTGTGGAGCTCTATGCTGAGT
TAAATGGACTTTCACTCGAACCGAAAGATTACTCAAAGGATAAGCCGTTTCCAGTGCTACTTGTAGCACCAACAGGAAGA
GCAGCAAAACGGATGAGTGAAGCAACAGGACTACCGGCTTTTACGATACATAGATTACTTGGGTGGAAAGGTGAGGCGGG
ATTTGAGCATGATGAGAATAATCCGATTGAAGGCAGGTTGTTAATTGTCGACGAAGTATCCATGGTTGACGTGTGGCTTG
CCAATCAATTATTTAAATCCTTACCATCTCAAATTCAAGTGATTGTTGTTGGTGATGAAGACCAACTTCCTTCGGTAGGG
CCAGGACAGGTGCTCAAGGATATGATCGATTCACATGCAGTTCCCGTTAGTAAACTGACGGACATTTATCGACAAGCTGA
AGGCTCTTCGATTATTGATCTCGCGCACTCTATTAAAGAAGGAGAGCTTCCAGAAGAGTTTCGGAAACCAACGCCTGATC
GGAGGTTCTTTCCTTGTTCCCAAGCACAGATTATTGAGGTTGTCTCGCAAGTGTGTGGCAATGCATTAAAGAAGGGATAC
TCTCCTCGGGATATTCAAGTTCTGGCTCCAATGTATCGAGGATCGGCAGGAGTGGATCGGCTAAATCAGGAGCTTCAAAA
GCTGTTTAATCCTGCAACAGAGCAGCGAAGAGAGCTTTTGCATGGAGATCTCGTTTATCGAGTCGGTGATAAAGTTCTTC
AACTTGTAAACAATCCTGAAGACAATGTCTACAATGGTGATATGGGCGAAGTTGTTTCTGTATTTTTTGCGAAAGAAAAT
ATTGAAAAGCAGGATCAGCTTGTTGTTTCATTTGATGGACAAGAAGTAGTTTATGACAGGCCTGACTTTAATCAATTAAC
ACATGCCTACTGCTGCTCCATTCATAAATCCCAGGGTAGTGAGTTTCCGATTGTTGTTCTTCCTATTGTAAGAGGGTATT
ATCGGATGCTACGAAAAAATCTTCTTTATACAGCCGTTACAAGGAGTAAGGATTATTTGATTTTATGTGGTGAAGAAGAG
GCCATTAAACTAGCTATCCAAACAGAAGATGATCAGGTTCGAAACACGCAATTAACGGAGAAATTGCAAGAAATGATCGG
GGAACAAAAGACAATTGAAGAGTCAATGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(333-527)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(668-716)

Helix-hairpin-helix containing domain (HHH_RecD2)

(150-241)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(581-651)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

58.233

98.81

0.575