Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   LC048_RS04685 Genome accession   NZ_CP129019
Coordinates   954423..956873 (+) Length   816 a.a.
NCBI ID   WP_306049567.1    Uniprot ID   -
Organism   Mesobacillus subterraneus strain KcN21-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 949423..961873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC048_RS04665 (LC048_04665) cymR 950674..951096 (+) 423 WP_226604172.1 cysteine metabolism transcriptional regulator CymR -
  LC048_RS04670 (LC048_04670) - 951196..952351 (+) 1156 Protein_914 cysteine desulfurase family protein -
  LC048_RS04675 (LC048_04675) mnmA 952395..953510 (+) 1116 WP_306049565.1 tRNA 2-thiouridine(34) synthase MnmA -
  LC048_RS04680 (LC048_04680) - 953679..954338 (+) 660 WP_226604182.1 tetratricopeptide repeat protein -
  LC048_RS04685 (LC048_04685) recD2 954423..956873 (+) 2451 WP_306049567.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LC048_RS04690 (LC048_04690) - 956930..957940 (-) 1011 WP_226604188.1 LysM peptidoglycan-binding domain-containing protein -
  LC048_RS04695 (LC048_04695) - 958111..958587 (+) 477 WP_226604190.1 PRC-barrel domain-containing protein -
  LC048_RS04700 (LC048_04700) - 958597..958788 (+) 192 WP_102263688.1 hypothetical protein -
  LC048_RS04705 (LC048_04705) - 958812..958946 (+) 135 WP_226604193.1 YrzQ family protein -
  LC048_RS04710 (LC048_04710) - 959237..960316 (+) 1080 WP_306050439.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 816 a.a.        Molecular weight: 92111.02 Da        Isoelectric Point: 4.8298

>NTDB_id=850584 LC048_RS04685 WP_306049567.1 954423..956873(+) (recD2) [Mesobacillus subterraneus strain KcN21-5]
MDKQDSLDLFSEQGKFMKGKHLVTIFHNEQNLYTVLRIRVEETNEQYEDKEAVITGYFPRIHEQETYIFFGEVKEHPKFG
AQFHATHFRKDLPQSKQGIISYLSGDLFKGIGKKTAEKIVDTLGEKTITRIIENPSVLDQIPKLAPEKAKELYDTLMEHQ
GLEQVMVALNEYGFGPQLSMKIYQVYKEQAIDVIQNNPYKLVEDIEGIGFGRADELGSQLGLTGNHPDRIKAACLYTLEN
SSIQGGHVFMEAENLLVEVKKLLEDNQNVEIVFTDISKEIIKLGEEGKLVAEEQRVYLPSLYYSEKGLVVNIKRILEQTE
YENQFPESEFLLALGNLEERLGVQYGPSQKEAIQTALMSPMMILTGGPGTGKTTVIKGIVELYAELHGCSLDPKDYKKEE
PYPFLLAAPTGRAAKRMTESTGLPAVTIHRLLRWNGAEGFDHNEDQPLEGKILIIDETSMVDIWLAHQLFKSLPDNIQVI
VVGDEDQLPSVGPGQVLKDLLDSGRVPTVRLTDIYRQAEGSSIIELAHQIKKGFLPEDISAQQPDRSFIKCTTSQIPQVV
EKVVANAKNKGYSPRSIQVLAPMYRGPAGIDRLNELLQDLFNPNSDGTRKELAFGDVKYRIGDKVLQLVNQPEANVFNGD
MGEVVAIFYAKENTEKQDQLIVSFDGIEVTYNRADLSQITHAYCCSVHKSQGSEFPIVVLPVVKSYFRMLRRNLIYTAIT
RSKQFLILVGEEEALKMGIERGEDTERNTTLVEKLVLLLPELQDETGTKEHSECKHQNHEDNIKVEKMNYIEIIKNADPM
IGMDNLTPYDFMEEGS

Nucleotide


Download         Length: 2451 bp        

>NTDB_id=850584 LC048_RS04685 WP_306049567.1 954423..956873(+) (recD2) [Mesobacillus subterraneus strain KcN21-5]
TTGGACAAACAGGACTCGCTTGATTTGTTTTCAGAACAAGGCAAGTTCATGAAAGGGAAGCATCTTGTTACCATTTTTCA
TAATGAACAGAATCTATACACAGTCCTTAGGATCAGGGTTGAGGAAACAAATGAGCAGTACGAGGATAAGGAAGCAGTCA
TTACAGGGTATTTCCCCCGGATTCATGAGCAGGAGACTTATATTTTCTTTGGTGAGGTAAAAGAACATCCTAAGTTCGGT
GCACAATTCCATGCGACTCATTTCCGGAAAGACTTGCCGCAGTCAAAGCAGGGGATCATCAGCTACCTTTCCGGTGACCT
TTTCAAAGGAATCGGGAAGAAAACAGCTGAGAAAATCGTTGATACACTGGGTGAAAAGACCATCACAAGGATTATCGAGA
ACCCGTCTGTCCTTGACCAGATTCCGAAGCTGGCACCTGAAAAAGCAAAGGAACTTTATGACACATTGATGGAGCATCAG
GGCCTCGAACAAGTGATGGTCGCATTGAATGAATATGGCTTTGGTCCTCAGCTGTCGATGAAAATTTATCAAGTTTACAA
GGAACAGGCGATTGATGTAATTCAGAACAATCCGTACAAGCTTGTGGAGGATATCGAAGGCATCGGTTTCGGGAGGGCGG
ATGAACTGGGCAGCCAGCTCGGTTTAACTGGTAACCATCCTGACCGGATCAAGGCAGCCTGTCTCTATACACTTGAAAAT
TCAAGCATACAGGGCGGTCATGTTTTCATGGAAGCAGAAAACCTTCTCGTCGAAGTGAAAAAGCTTCTAGAAGACAATCA
AAATGTTGAAATTGTATTTACTGATATCTCAAAGGAAATCATCAAGCTCGGTGAAGAAGGAAAGCTGGTTGCTGAAGAAC
AGAGAGTCTATTTGCCATCTCTCTATTATTCGGAAAAGGGCCTGGTTGTGAACATTAAAAGAATCCTTGAACAGACAGAA
TACGAAAATCAATTTCCTGAATCGGAGTTTCTCCTAGCGCTCGGAAATCTTGAGGAGCGCCTTGGTGTCCAATATGGGCC
AAGCCAGAAGGAAGCGATTCAGACAGCGCTTATGTCACCGATGATGATTCTGACCGGTGGGCCCGGCACAGGTAAAACGA
CGGTCATTAAAGGAATTGTTGAGCTATATGCAGAGCTACATGGCTGTTCACTTGACCCGAAAGATTATAAAAAAGAAGAA
CCTTATCCGTTCTTGCTTGCGGCGCCGACTGGTCGTGCGGCAAAGAGGATGACTGAGTCAACAGGTCTTCCTGCCGTGAC
CATTCATAGGCTTTTGCGCTGGAATGGCGCAGAAGGTTTTGACCATAATGAAGACCAGCCGCTTGAGGGAAAGATATTGA
TTATTGATGAAACCTCAATGGTTGATATATGGCTCGCCCATCAATTATTCAAATCTCTGCCTGACAATATTCAGGTGATC
GTTGTAGGAGATGAAGACCAGCTTCCTTCAGTAGGTCCTGGCCAGGTACTGAAGGATCTACTTGATTCCGGCAGGGTCCC
GACTGTTAGGCTGACGGATATATACCGACAGGCTGAAGGATCATCAATAATCGAACTTGCTCATCAAATCAAAAAAGGCT
TTCTGCCAGAAGATATTTCTGCTCAGCAGCCTGACCGTTCTTTTATAAAATGTACGACAAGCCAGATTCCTCAGGTAGTC
GAAAAGGTTGTCGCCAATGCTAAGAATAAAGGGTATTCTCCTAGGAGCATCCAGGTGCTGGCACCAATGTACCGTGGTCC
AGCCGGCATTGACCGGTTGAACGAGCTGCTGCAGGATCTCTTCAATCCTAATTCTGATGGAACGAGAAAAGAGCTTGCAT
TTGGCGATGTGAAGTATCGTATCGGGGATAAGGTCCTTCAGCTGGTAAATCAGCCGGAAGCCAATGTGTTCAATGGTGAC
ATGGGTGAGGTTGTCGCGATCTTTTACGCGAAGGAAAACACCGAAAAGCAAGATCAGCTGATTGTGTCCTTTGATGGCAT
AGAAGTTACATATAATAGGGCAGACCTCTCGCAAATCACCCACGCTTATTGCTGTTCCGTGCATAAATCCCAGGGTAGTG
AATTTCCGATTGTCGTCCTTCCAGTAGTGAAAAGCTACTTCAGAATGCTGCGCAGGAATCTGATTTATACCGCAATCACC
AGGAGCAAGCAATTCCTGATTCTTGTTGGTGAAGAAGAAGCACTGAAGATGGGGATCGAACGCGGTGAAGATACCGAAAG
GAATACAACTCTTGTAGAAAAGCTTGTTCTATTGCTGCCCGAATTGCAGGATGAAACGGGTACAAAGGAACATTCGGAGT
GTAAGCACCAAAATCATGAAGATAACATCAAAGTTGAAAAAATGAATTATATTGAAATTATTAAAAACGCTGATCCGATG
ATTGGAATGGACAATCTGACTCCTTATGATTTTATGGAGGAAGGTAGTTAG

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-664)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

AAA domain (AAA_30)

(345-553)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.084

99.51

0.608