Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   LC048_RS04610 Genome accession   NZ_CP129019
Coordinates   935998..938364 (+) Length   788 a.a.
NCBI ID   WP_226604118.1    Uniprot ID   -
Organism   Mesobacillus subterraneus strain KcN21-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 930998..943364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC048_RS04590 (LC048_04590) - 931517..931813 (+) 297 WP_226604107.1 post-transcriptional regulator -
  LC048_RS04595 (LC048_04595) secDF 932042..934312 (+) 2271 WP_226604109.1 protein translocase subunit SecDF -
  LC048_RS04600 (LC048_04600) - 934472..935395 (+) 924 WP_226604112.1 cation diffusion facilitator family transporter -
  LC048_RS04605 (LC048_04605) - 935416..935733 (+) 318 WP_226604115.1 lipopolysaccharide assembly LapA domain-containing protein -
  LC048_RS04610 (LC048_04610) recJ 935998..938364 (+) 2367 WP_226604118.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  LC048_RS04615 (LC048_04615) - 938406..938867 (+) 462 WP_306050436.1 adenine phosphoribosyltransferase -
  LC048_RS04620 (LC048_04620) - 939178..941371 (+) 2194 Protein_904 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  LC048_RS04625 (LC048_04625) dtd 941419..941859 (+) 441 WP_226604139.1 D-aminoacyl-tRNA deacylase -
  LC048_RS04630 (LC048_04630) - 941921..943096 (-) 1176 WP_306049562.1 N-acetylmuramoyl-L-alanine amidase -
  LC048_RS24925 - 943259..943309 (-) 51 Protein_907 hypothetical protein -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 87877.67 Da        Isoelectric Point: 5.0152

>NTDB_id=850583 LC048_RS04610 WP_226604118.1 935998..938364(+) (recJ) [Mesobacillus subterraneus strain KcN21-5]
MLKPKSRWIVKKSDQTIIESLAEEMNINHLTASLLVNRGLDTVEDARYFLFGQKSEFHDPFLLKDMDKAVERINKAIETQ
EPILVFGDYDADGVSSTTVLMKALAELGANADYYIPNRFTEGYGPNEKAFRSAADSGVGLIITVDTGISALHEATVAKDL
GVDLIITDHHEPGPVLPDAFAIIHPKLDDSVYPFKDLAGVGVAFKVAHALLGRVPEHLLEFAAIGTIADLVPLMGENRLI
AQRGIEKLKATQSPGLNALLKLAKTDRAGIDEETIGFMIGPRVNAAGRLGSADPAVQLMMTLDPEEAMMLAEEIDSINKE
RQNIVSQIAEEAVAEVERNYPIEDNSVLVVGKEGWNAGVIGIVASKLVEKYYRPTIVLSFDKEKGLAKGSARSIAGFDLF
KNLSTCRDILPHFGGHPMAAGMTLSLDDVDALRSRLNALAIEQLKEEDLIPVSHIDARIDVKEITIETINELGMLSPYGV
SNPKPKVLIDGANISTLRKIGADQSHLKLALEEEGTVIDGIGFGFGYLHDHISPSSQLSVIGELSINEWNNIKKPQIFLR
DVAVKNWQLFDFRGLKRLEKLPAMIPGSNIKWILFNSDLKNKFSPIIGDSLELVSTEEQAEQIGFDQSYVVLLDLPPSKD
ILEKLFAGKKPGRIYVHFYKENSDFFTTMPTREHFKWFYAFLAKKGPFDLKRYGGDLAKHKGWTKETVEFMSQVFFELEF
VKINNGFISLEENLPKRDLSESKTYQHKVQAFTLENELLYSSYEQLKNWFDHFVQESVKNEEAIIQWI

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=850583 LC048_RS04610 WP_226604118.1 935998..938364(+) (recJ) [Mesobacillus subterraneus strain KcN21-5]
ATGTTAAAGCCAAAATCAAGGTGGATTGTTAAAAAATCTGACCAGACAATAATAGAGTCACTCGCCGAGGAAATGAACAT
AAATCATCTGACTGCTTCATTGCTAGTCAATCGCGGACTGGATACCGTGGAAGATGCCCGGTATTTTTTATTTGGGCAAA
AAAGCGAATTTCACGACCCATTTTTGCTGAAAGATATGGATAAGGCTGTTGAGCGGATCAATAAGGCAATAGAAACGCAA
GAGCCTATTTTGGTATTTGGTGATTATGATGCAGATGGTGTAAGCAGTACAACAGTCCTGATGAAGGCTCTGGCTGAACT
AGGAGCGAACGCTGACTATTACATACCGAACCGTTTTACAGAAGGGTACGGTCCAAATGAGAAAGCATTCCGAAGTGCCG
CAGACAGCGGAGTAGGCTTGATCATTACTGTCGATACGGGCATATCAGCTCTTCATGAAGCAACTGTTGCCAAGGACTTA
GGTGTCGACCTGATCATAACGGATCACCATGAACCGGGTCCGGTCCTGCCTGATGCGTTTGCGATCATTCATCCAAAGCT
GGACGACAGTGTATACCCTTTCAAGGATTTAGCTGGTGTAGGTGTCGCTTTTAAGGTTGCACATGCTTTGCTTGGAAGAG
TCCCGGAGCATTTGTTGGAGTTTGCCGCTATAGGGACAATTGCCGACCTCGTACCCCTGATGGGAGAGAACAGGCTGATT
GCTCAGAGGGGAATAGAGAAATTGAAGGCGACCCAGTCACCTGGTTTGAATGCGCTTCTTAAGCTGGCTAAAACAGACAG
GGCAGGCATTGATGAAGAAACCATCGGTTTTATGATTGGCCCGAGGGTTAATGCAGCCGGCCGGCTTGGCAGCGCTGATC
CTGCGGTTCAATTGATGATGACTCTTGATCCTGAAGAGGCGATGATGCTAGCAGAAGAAATCGATTCAATAAATAAAGAA
CGGCAGAATATTGTTTCACAAATTGCTGAAGAAGCAGTTGCTGAAGTAGAAAGGAATTATCCAATAGAAGATAATTCAGT
CCTTGTCGTCGGCAAGGAAGGCTGGAACGCAGGAGTCATTGGCATCGTAGCCTCCAAGCTCGTTGAGAAATATTACCGAC
CAACGATTGTTCTCAGTTTTGATAAAGAGAAGGGGCTCGCGAAAGGATCTGCACGCAGTATCGCCGGTTTCGATCTTTTT
AAAAATCTTTCAACCTGCAGAGACATCCTTCCTCATTTTGGCGGACATCCAATGGCCGCGGGCATGACATTGAGTCTTGA
TGATGTCGACGCATTAAGGTCAAGGTTGAATGCACTGGCAATAGAGCAGCTGAAAGAAGAAGATTTAATTCCGGTATCCC
ATATCGATGCCAGGATTGATGTGAAAGAGATTACGATTGAAACGATAAATGAACTTGGAATGCTTTCTCCATATGGTGTA
AGCAACCCTAAACCGAAAGTGCTGATTGATGGGGCCAATATTTCCACCCTGAGAAAGATAGGGGCAGATCAGTCACATCT
TAAGCTGGCACTTGAAGAGGAAGGTACTGTGATTGATGGAATAGGTTTCGGCTTTGGATATCTCCATGACCATATCTCGC
CGAGTTCGCAGCTGTCGGTCATTGGCGAACTGTCGATCAACGAATGGAACAATATCAAGAAACCGCAGATTTTTCTTAGG
GACGTAGCCGTCAAGAACTGGCAGCTATTCGATTTTCGTGGGCTTAAAAGGTTGGAAAAGCTTCCAGCCATGATTCCAGG
CAGTAATATTAAGTGGATTCTATTCAACTCCGATTTGAAAAATAAGTTTTCTCCTATAATCGGAGACTCATTGGAACTGG
TATCAACTGAAGAGCAGGCTGAACAAATCGGGTTCGACCAATCTTATGTCGTCCTGTTGGACCTGCCGCCTTCCAAAGAT
ATACTGGAGAAATTATTTGCCGGGAAGAAGCCGGGAAGGATTTATGTCCATTTTTACAAAGAAAACAGCGATTTCTTCAC
GACTATGCCAACCAGGGAGCATTTCAAATGGTTTTATGCTTTCCTCGCAAAGAAAGGGCCATTTGACCTAAAACGTTATG
GCGGCGATTTGGCCAAGCATAAAGGGTGGACAAAAGAAACAGTAGAATTCATGTCGCAGGTGTTTTTTGAACTAGAGTTT
GTTAAAATAAACAATGGGTTTATTTCACTAGAAGAAAATCTCCCTAAAAGGGATCTTTCTGAATCCAAAACATATCAGCA
CAAGGTGCAAGCATTTACTCTTGAAAATGAATTGCTCTACTCATCGTATGAGCAATTGAAGAATTGGTTTGACCATTTCG
TTCAAGAGTCGGTGAAAAATGAGGAGGCAATTATTCAATGGATTTGA

Domains

Predicted by InterproScan.

DHH family (DHH)

(83-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-770)

DHHA1 domain (DHHA1)

(315-439)

RecJ OB domain (RecJ_OB)

(455-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

53.189

99.492

0.529