Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   LC065_RS20510 Genome accession   NZ_CP129016
Coordinates   2217123..2217701 (+) Length   192 a.a.
NCBI ID   WP_371933326.1    Uniprot ID   -
Organism   Halobacillus litoralis strain SaN21-8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2212123..2222701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC065_RS11130 (LC065_11130) spoVB 2212191..2213750 (-) 1560 WP_306163413.1 stage V sporulation protein B -
  LC065_RS11135 (LC065_11135) - 2213864..2214160 (+) 297 WP_226591172.1 post-transcriptional regulator -
  LC065_RS11140 (LC065_11140) secDF 2214329..2216608 (+) 2280 WP_306163414.1 protein translocase subunit SecDF -
  LC065_RS11145 (LC065_11145) - 2216734..2217066 (+) 333 WP_226591167.1 lipopolysaccharide assembly LapA domain-containing protein -
  LC065_RS20510 recJ 2217123..2217701 (+) 579 WP_371933326.1 DHH family phosphoesterase Machinery gene
  LC065_RS11150 (LC065_11150) - 2217780..2219450 (+) 1671 WP_371933327.1 single-stranded-DNA-specific exonuclease C-terminal domain-containing protein -
  LC065_RS11155 (LC065_11155) - 2219440..2219952 (+) 513 WP_146812750.1 adenine phosphoribosyltransferase -
  LC065_RS11160 (LC065_11160) - 2220090..2222294 (+) 2205 WP_226591160.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 21275.03 Da        Isoelectric Point: 4.3186

>NTDB_id=850575 LC065_RS20510 WP_371933326.1 2217123..2217701(+) (recJ) [Halobacillus litoralis strain SaN21-8]
MIQSKMKWKFTYRNPEESSADLPGVTPLTQQLLEKRGVLSAEAADRFLKPSIDQLHDPMLMEGMDRAVARVKEAIASDQS
ILVFGDYDADGVTSTSVMVEALRKAGADCDFYIPNRFTEGYGPNKEAFQFAYDSGYALIITVDTGIAAMEEATFAKDLGI
DLIITDHHEVQEVLPDAYAIIHPKTSADYPFQ

Nucleotide


Download         Length: 579 bp        

>NTDB_id=850575 LC065_RS20510 WP_371933326.1 2217123..2217701(+) (recJ) [Halobacillus litoralis strain SaN21-8]
ATGATACAAAGCAAGATGAAATGGAAATTTACATATAGAAATCCGGAAGAAAGTTCTGCAGATCTTCCAGGCGTTACTCC
GCTTACTCAGCAGCTTTTAGAAAAAAGAGGGGTGCTTAGTGCGGAAGCGGCGGATCGGTTTTTAAAGCCTTCAATTGATC
AGCTTCACGATCCTATGCTCATGGAGGGGATGGATCGTGCCGTGGCTCGTGTGAAAGAAGCCATCGCTTCTGATCAGTCT
ATTCTTGTTTTTGGTGACTACGATGCAGACGGTGTGACCTCTACATCTGTCATGGTGGAAGCACTCAGAAAAGCGGGAGC
GGACTGTGACTTCTATATTCCCAACCGTTTTACAGAAGGGTATGGTCCAAATAAAGAAGCTTTTCAATTTGCCTATGATT
CCGGTTATGCTCTGATCATAACTGTGGATACAGGTATCGCTGCTATGGAAGAGGCAACATTCGCGAAAGATTTGGGTATC
GATTTGATTATCACCGATCACCACGAAGTACAGGAGGTCCTTCCTGATGCTTATGCCATTATCCACCCGAAGACTTCAGC
GGATTATCCATTCCAGTAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(81-185)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

50.769

100

0.516