Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   LC065_RS11225 Genome accession   NZ_CP129016
Coordinates   2234579..2236906 (+) Length   775 a.a.
NCBI ID   WP_226591132.1    Uniprot ID   -
Organism   Halobacillus litoralis strain SaN21-8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2229579..2241906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC065_RS11200 (LC065_11200) - 2230420..2231104 (+) 685 Protein_2173 YitT family protein -
  LC065_RS11205 (LC065_11205) cymR 2231058..2231477 (+) 420 WP_146812759.1 cysteine metabolism transcriptional regulator CymR -
  LC065_RS11210 (LC065_11210) - 2231495..2232634 (+) 1140 WP_226591140.1 cysteine desulfurase family protein -
  LC065_RS11215 (LC065_11215) mnmA 2232653..2233765 (+) 1113 WP_226591137.1 tRNA 2-thiouridine(34) synthase MnmA -
  LC065_RS11220 (LC065_11220) - 2233904..2234563 (+) 660 WP_226591135.1 lipopolysaccharide assembly protein LapB -
  LC065_RS11225 (LC065_11225) recD2 2234579..2236906 (+) 2328 WP_226591132.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LC065_RS11230 (LC065_11230) - 2236918..2237730 (+) 813 WP_226591129.1 TIM barrel protein -
  LC065_RS11235 (LC065_11235) - 2237787..2237963 (+) 177 WP_089652618.1 hypothetical protein -
  LC065_RS11240 (LC065_11240) - 2237970..2239037 (+) 1068 WP_226591126.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 775 a.a.        Molecular weight: 88058.61 Da        Isoelectric Point: 4.7494

>NTDB_id=850558 LC065_RS11225 WP_226591132.1 2234579..2236906(+) (recD2) [Halobacillus litoralis strain SaN21-8]
MTQQSLFQDSNEERPYVKGELSRMIFHNESEHFSIASINVKETNEVFEEKSLVIKGHFSPLEEGETYMFYGEFKNHKKFG
LQYEVDMYNRVLPETKDGIVLYLSSDLFHGIGKKTAERIVDELGEQAISRILENRDVLDTVPKLPKEKADQLYEALKEHQ
GFEHVMIHLSQYGFGLKLAQKIYEAFKDQTMAIIEEDPYQLVFHVDGFGFHRADEMAKMQNLSHDHPTRIRAACLYMMQK
SMSAGHVYLPTEECLVQVEQLLNQGSDPAITFEQLSEQMIHLGEERFVYIEEERIYLPTLYFAENGFCGHVDRIQEKEVD
AAHTQADLMKIIGDLEEEEAMSYGEDQFTAIEKALHSKLMILTGGPGTGKTTVIKGIIHTYAELNDLSIDPGDYDSDKPF
PFVLAAPTGRAAKRMTESTGLPASTIHRLLGWDGHDSFERNQNNPLEGSVLIIDEFSMVDIWLANQLFRAIPDDMQVLLV
GDEDQLPSVGPGQVLADLLASHTLPSVKLTEVYRQKEGSKIIQLAHEIKKDACTSASLEKDHDFNFIPAREHQLSDLVTN
IVQKALDKGNDLKDIQVLAPMYRTDVGIHKLNESIQQTVNPKSKQKRDLRHFDVTYRKGDKVIQLVNQPEDGVYNGDIGE
IVAIFRAEENVDGVEQVVVDFEGKEVVYPKKDLNSIMHAYCTSIHKSQGSEFSIVILPIVRSYRRMLRKNLIYTAITRSK
QSLIICGDPAAFLDGVGTTDTNTRYTRLKEKLQEESAPEVDTEEEEEQLSPYDFM

Nucleotide


Download         Length: 2328 bp        

>NTDB_id=850558 LC065_RS11225 WP_226591132.1 2234579..2236906(+) (recD2) [Halobacillus litoralis strain SaN21-8]
ATGACTCAACAATCGCTCTTTCAAGATTCGAATGAAGAACGTCCGTACGTCAAAGGGGAATTGAGTCGGATGATTTTTCA
TAATGAATCCGAGCACTTTTCGATCGCTTCCATTAATGTTAAGGAAACAAATGAAGTTTTCGAGGAAAAGTCCCTTGTGA
TCAAAGGGCATTTTTCTCCTTTGGAAGAAGGCGAAACGTATATGTTTTATGGAGAATTCAAAAACCATAAGAAATTCGGG
CTGCAATATGAGGTCGACATGTACAATCGTGTCCTGCCTGAAACGAAAGATGGAATCGTCCTTTACTTGTCCAGCGACCT
TTTTCACGGCATCGGAAAAAAAACGGCCGAACGAATCGTAGATGAGTTAGGAGAACAAGCGATATCGAGGATACTGGAAA
ACCGTGATGTGCTGGACACTGTTCCAAAGCTCCCTAAAGAAAAAGCGGATCAACTATATGAAGCCTTAAAAGAGCATCAA
GGGTTCGAGCACGTCATGATTCATTTGTCCCAATATGGATTTGGTTTGAAGCTTGCTCAGAAAATTTATGAAGCCTTTAA
GGATCAAACGATGGCCATCATTGAAGAGGACCCTTATCAGCTCGTCTTCCATGTGGATGGTTTTGGTTTTCATCGAGCGG
ATGAAATGGCGAAGATGCAGAACCTTTCCCATGATCATCCCACAAGGATTCGGGCGGCGTGTTTGTATATGATGCAAAAA
AGTATGAGTGCGGGTCATGTTTATTTACCTACAGAAGAGTGTCTCGTCCAGGTTGAACAGCTTTTGAATCAGGGTTCCGA
TCCGGCCATTACTTTTGAACAGCTATCTGAGCAAATGATCCACCTTGGTGAGGAACGTTTTGTGTATATTGAAGAGGAAC
GTATCTACCTTCCGACACTATATTTTGCCGAAAATGGCTTTTGTGGTCATGTGGATCGTATTCAAGAAAAAGAGGTTGAT
GCAGCCCATACACAGGCAGATTTGATGAAAATCATCGGGGATCTGGAAGAAGAGGAAGCGATGAGCTATGGGGAAGATCA
GTTCACTGCCATCGAAAAAGCTCTTCATTCCAAATTGATGATTTTAACAGGTGGACCGGGAACGGGGAAAACTACAGTTA
TTAAAGGAATCATCCATACGTATGCAGAATTGAACGATCTTTCTATTGATCCCGGAGATTATGATAGTGACAAGCCATTT
CCATTCGTTCTTGCAGCACCTACAGGGAGAGCGGCAAAAAGGATGACAGAATCGACGGGGCTTCCGGCAAGCACTATCCA
CCGTTTGCTTGGGTGGGATGGGCATGACTCCTTTGAACGCAATCAGAACAACCCACTGGAAGGGAGTGTATTGATCATCG
ATGAGTTTTCGATGGTCGATATTTGGCTTGCTAACCAGTTGTTCCGTGCCATTCCTGATGATATGCAGGTCTTGCTAGTG
GGAGACGAAGACCAACTGCCTTCGGTAGGGCCTGGCCAGGTGCTTGCTGACCTCCTGGCTTCTCACACGCTTCCTTCTGT
GAAGTTAACAGAAGTCTATCGTCAAAAGGAAGGTTCGAAAATCATCCAGCTTGCTCATGAAATAAAAAAGGATGCTTGTA
CTTCTGCCTCTCTTGAAAAGGATCATGATTTCAACTTTATCCCAGCAAGAGAACACCAGTTAAGTGATCTCGTGACAAAC
ATTGTTCAAAAAGCGTTGGACAAGGGGAATGACTTGAAAGATATTCAAGTACTTGCGCCGATGTACCGTACAGACGTGGG
GATTCATAAGTTAAATGAAAGCATCCAGCAGACGGTCAATCCGAAAAGTAAACAAAAACGCGACTTGAGGCACTTCGATG
TGACCTATCGAAAAGGGGATAAGGTCATCCAATTGGTAAATCAGCCGGAAGATGGTGTTTACAATGGAGATATCGGTGAG
ATTGTAGCGATTTTCCGAGCGGAAGAAAACGTCGATGGCGTTGAGCAGGTAGTCGTCGATTTTGAAGGAAAAGAAGTAGT
TTATCCAAAAAAAGACTTGAACAGTATTATGCACGCCTATTGTACATCCATCCATAAATCACAAGGTAGTGAGTTTTCCA
TCGTTATTCTGCCAATCGTAAGAAGTTACCGTAGAATGTTGAGAAAGAATCTAATTTATACGGCTATTACAAGATCCAAA
CAGTCTCTCATCATTTGCGGCGACCCTGCCGCTTTTCTTGACGGTGTGGGAACGACCGATACAAATACGAGATATACCAG
GTTGAAAGAGAAACTCCAGGAAGAATCAGCGCCTGAAGTGGACACAGAAGAAGAGGAAGAGCAGTTGTCACCATATGATT
TTATGTAG

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(678-726)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-248)

AAA domain (AAA_30)

(343-536)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-661)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.17

100

0.497