Detailed information NTG0850517

Bioinformatically predicted

Overview

• Name: recJ
• Type: Machinery gene
• Locus tag: LC087_RS08135
• Genome accession: NZ_CP129013
• Coordinates: 1582961..1585300 (-)
• Length: 779 a.a.
• NCBI ID: WP_226542102.1
• Uniprot ID: -
• Organism: Bacillus carboniphilus strain SaN35-3
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1577961..1590300

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LC087_RS08110 (LC087_08110)	-	1578153..1578664 (-)	512	Protein_1609	transposase	-
LC087_RS08115 (LC087_08115)	-	1578730..1579143 (-)	414	WP_306019642.1	transposase zinc-binding domain-containing protein	-
LC087_RS08120 (LC087_08120)	dtd	1579458..1579898 (-)	441	WP_226542096.1	D-aminoacyl-tRNA deacylase	-
LC087_RS08125 (LC087_08125)	-	1579915..1582110 (-)	2196	Protein_1612	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	-
LC087_RS08130 (LC087_08130)	-	1582436..1582948 (-)	513	WP_226542100.1	adenine phosphoribosyltransferase	-
LC087_RS08135 (LC087_08135)	recJ	1582961..1585300 (-)	2340	WP_226542102.1	single-stranded-DNA-specific exonuclease RecJ	Machinery gene
LC087_RS08140 (LC087_08140)	-	1585508..1585813 (+)	306	WP_226542104.1	hypothetical protein	-
LC087_RS08145 (LC087_08145)	-	1585882..1586508 (+)	627	WP_226542105.1	glycosyltransferase family A protein	-
LC087_RS08150 (LC087_08150)	-	1586584..1587240 (+)	657	WP_306020600.1	glycosyltransferase family 2 protein	-
LC087_RS08155 (LC087_08155)	-	1587254..1587397 (+)	144	WP_306020602.1	hypothetical protein	-
LC087_RS08160 (LC087_08160)	secDF	1587433..1589670 (-)	2238	WP_226542176.1	protein translocase subunit SecDF	-
LC087_RS08165 (LC087_08165)	-	1589704..1590021 (-)	318	WP_226542107.1	post-transcriptional regulator	-

Sequence

Protein

• Length: 779 a.a.
• Molecular weight: 87371.77 Da
• Isoelectric Point: 4.8369

>NTDB_id=850517 LC087_RS08135 WP_226542102.1 1582961..1585300(-) (recJ) [Bacillus carboniphilus strain SaN35-3]
MLKPSKRWIVEKNNNEQVVERLSKQLSINPIVSSMLVKRGVESVEQAESFLNTESTSFHDPFLFNGMDKLVARINDAIEL
NQSIMVYGDYDADGVTSTTVLLSALRELGAKADFYIPNRFSEGYGPNKDAFQFIANQGYGLIITVDNGISGTDEVEFVNQ
LGVDVIITDHHEPGPVLPDAFVIIHPKIEGSSYPFEELAGVGVAFKVAHALLGYAPTQLLDLVAVGTVADLVPLHGENRI
IVRQGIDQLKRTKNIGLKALMKTASVDPLTINEESIGFSIGPRLNAVGRLTDADAAVELLLSDDVQGAEALAEEIDKFNN
DRKKIVSQITGEAAQQVEELYHEIPSVIVVAKEGWNPGVVGIVASQLVEKFYRPTIVLSIDSSSNIAKGSARSIEGFDIY
QNLFQCKELLTNFGGHPMAGGMTLSSNNLKEFRLQINQLGEEQLSAEQLTPVLKIDQVCTLKDITIELIEEIEQLAPFGV
GNGKPLFLIEDTKISFFKKVGSDSSHLKLVIQEEEQSIDVIGFGFGGIADELSLNTKAYFVGELSINEWNNNRKPQVMLR
DLKVDEWQLFDLRGSKQVSQELLSQQNTIYLAFDIETKKLPEFDFIKEKINLIDDLPQGAFSNKYVVLLDMPQHKDQLDK
LPIFGIPDRVYTIFKQKSEHFFSTIPKREHFKWYFAFLKKRGRFDMQKHGVELAKYKGWTKDTIRFMSQVFFDLGFVTIE
NGVILLNENIQKRDLHESSTFSLKQAQIEMEQLMLYSSKDELRKCLDQHFQQSSSVVLT

Nucleotide

• Length: 2340 bp

>NTDB_id=850517 LC087_RS08135 WP_226542102.1 1582961..1585300(-) (recJ) [Bacillus carboniphilus strain SaN35-3]
ATGCTTAAACCGAGTAAACGGTGGATTGTAGAAAAAAATAATAATGAACAAGTGGTTGAACGGTTATCAAAACAGCTTTC
TATTAATCCGATAGTCTCATCAATGTTAGTAAAAAGAGGCGTGGAATCTGTTGAACAAGCGGAAAGTTTTTTAAACACAG
AAAGTACAAGTTTTCACGATCCCTTTCTTTTTAACGGTATGGATAAACTTGTTGCAAGGATTAATGATGCGATTGAACTT
AATCAATCTATTATGGTTTATGGGGATTATGATGCAGATGGTGTCACTAGTACAACAGTTTTATTATCCGCCCTACGTGA
ACTAGGTGCAAAAGCTGATTTTTATATACCGAATCGTTTTTCTGAAGGGTACGGTCCCAATAAAGATGCGTTTCAATTTA
TTGCAAATCAAGGGTACGGTTTAATTATTACAGTTGACAATGGAATTAGTGGAACAGACGAAGTAGAATTTGTCAATCAG
TTAGGTGTGGATGTCATTATTACGGACCACCATGAACCTGGACCAGTCCTTCCTGACGCATTTGTTATTATTCATCCGAA
AATTGAAGGTTCTTCCTATCCCTTTGAGGAATTAGCGGGTGTTGGGGTTGCTTTTAAGGTTGCCCATGCTCTTTTAGGCT
ATGCTCCAACACAATTGTTAGATTTAGTAGCAGTAGGAACTGTTGCGGATTTAGTCCCATTGCACGGAGAAAATAGAATA
ATTGTAAGACAAGGAATTGATCAATTAAAAAGAACGAAAAACATAGGACTTAAAGCGTTGATGAAAACAGCTTCTGTTGA
TCCACTTACTATTAATGAAGAGTCTATAGGTTTTTCTATTGGCCCTAGACTGAATGCAGTCGGTCGACTCACAGATGCTG
ATGCAGCAGTTGAATTATTATTGTCTGATGATGTACAAGGGGCAGAAGCTCTTGCTGAGGAAATTGATAAGTTTAATAAT
GACCGCAAGAAGATTGTTAGTCAAATAACGGGGGAAGCGGCTCAACAAGTAGAAGAGCTTTATCACGAGATTCCTTCTGT
TATTGTCGTGGCAAAGGAAGGATGGAATCCTGGTGTTGTTGGAATTGTTGCTTCCCAACTTGTAGAGAAGTTTTATCGCC
CAACGATTGTATTAAGTATCGATTCGTCTTCAAACATAGCAAAAGGCTCTGCTAGAAGTATAGAAGGATTTGATATTTAT
CAAAATCTCTTTCAATGTAAAGAACTATTGACGAACTTTGGTGGACATCCCATGGCAGGGGGAATGACTTTATCTAGTAA
CAATTTGAAGGAATTTCGCTTACAGATTAATCAATTAGGAGAAGAACAATTGTCTGCTGAACAATTAACTCCAGTTTTAA
AAATTGATCAAGTTTGCACGCTAAAGGATATTACGATTGAATTGATTGAGGAAATTGAGCAACTCGCTCCTTTTGGTGTT
GGAAATGGGAAGCCACTATTTTTAATAGAGGACACTAAAATTTCTTTTTTTAAAAAAGTTGGAAGTGACTCCTCACATTT
AAAGCTCGTTATACAAGAGGAAGAACAATCGATCGACGTGATCGGTTTTGGGTTTGGAGGAATAGCTGACGAACTCTCTT
TAAATACGAAAGCCTATTTCGTTGGTGAACTATCAATTAATGAATGGAATAATAACCGAAAACCTCAAGTTATGCTCCGT
GATTTGAAGGTTGACGAATGGCAACTATTTGATCTTAGAGGATCTAAGCAAGTGAGCCAGGAGCTACTAAGCCAACAAAA
TACTATATATTTGGCATTTGACATAGAAACTAAAAAGCTCCCTGAATTTGATTTTATTAAAGAGAAAATTAATCTTATTG
ACGATTTACCTCAAGGTGCATTTTCAAATAAATATGTTGTCTTACTAGATATGCCACAACATAAAGATCAACTTGATAAA
TTACCTATTTTTGGAATACCTGATCGAGTTTATACAATTTTTAAACAAAAATCGGAACATTTTTTTTCGACTATACCAAA
AAGAGAGCATTTCAAGTGGTATTTCGCCTTCTTGAAAAAAAGAGGACGGTTTGATATGCAAAAACATGGAGTCGAACTGG
CGAAATATAAAGGATGGACGAAAGATACGATCAGATTTATGTCGCAGGTGTTTTTTGACTTAGGATTTGTTACAATAGAG
AATGGTGTTATTTTATTAAATGAGAACATACAAAAAAGAGATCTTCATGAATCTAGTACGTTTTCACTAAAACAAGCCCA
AATTGAAATGGAACAGTTAATGCTATATTCTTCAAAGGATGAGTTAAGAAAATGTTTGGATCAACACTTTCAACAAAGTT
CCAGTGTGGTATTGACATGA

Domains

Predicted by InterproScan.

• DHHA1 domain (DHHA1) (316-438)

• Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C) (568-766)

• DHH family (DHH) (84-227)

• RecJ OB domain (RecJ_OB) (455-561)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recJ	Bacillus subtilis subsp. subtilis str. 168	49.037	100	0.49