Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   LC087_RS08045 Genome accession   NZ_CP129013
Coordinates   1565538..1567913 (-) Length   791 a.a.
NCBI ID   WP_306020583.1    Uniprot ID   -
Organism   Bacillus carboniphilus strain SaN35-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1560538..1572913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC087_RS08030 (LC087_08030) - 1563588..1564649 (-) 1062 WP_226542957.1 AI-2E family transporter -
  LC087_RS08035 (LC087_08035) - 1564790..1564981 (-) 192 WP_226542959.1 DUF2797 domain-containing protein -
  LC087_RS08040 (LC087_08040) - 1564994..1565458 (-) 465 WP_226542961.1 PRC-barrel domain-containing protein -
  LC087_RS08045 (LC087_08045) recD2 1565538..1567913 (-) 2376 WP_306020583.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LC087_RS08050 (LC087_08050) - 1567938..1568591 (-) 654 WP_226542965.1 tetratricopeptide repeat protein -
  LC087_RS08055 (LC087_08055) mnmA 1568644..1569757 (-) 1114 Protein_1599 tRNA 2-thiouridine(34) synthase MnmA -
  LC087_RS08060 (LC087_08060) - 1569780..1570934 (-) 1155 WP_226542969.1 cysteine desulfurase family protein -
  LC087_RS08065 (LC087_08065) cymR 1570954..1571373 (-) 420 WP_226542971.1 cysteine metabolism transcriptional regulator CymR -
  LC087_RS08070 (LC087_08070) - 1571547..1572644 (-) 1098 WP_306020590.1 AAA family ATPase -

Sequence

Protein


Download         Length: 791 a.a.        Molecular weight: 89784.81 Da        Isoelectric Point: 5.4040

>NTDB_id=850516 LC087_RS08045 WP_306020583.1 1565538..1567913(-) (recD2) [Bacillus carboniphilus strain SaN35-3]
MKEENYNQESFLTGEVKSIIFRNQDNLYSVLKIFVEESDQTLDEDIITVTGYFPVLHEDDVYTFHGSFIKHPKFGNQFQA
NRFQKQQPQTKSGIIRYLSSDLFKGIGPKTAESIVDELGNQAISLILQDPSVLGKIKKLSKQKRIDLVESLKEHQGIEQM
MIHLNEFGFGPQLSTKIYQKYRDEAIEIIQTNPYRLVDDIKGIGFARADEIGQYFGLSGNHPDRINAGILFILEQETSQE
GHAFLQIDQLGEKARQLLNHNSNISINEIHNQLSLLEEQKKIMKDDQRVYLPSLYFSEKGLSREIKRLMKQTEYKDLFPE
SEFLMALGNLEERLNVEYAPLQKDGIQRALQSPITILTGGPGTGKTTVIKGIVELYSELHGCSLDDKDYKKKNEPFPILL
AAPTGRAAKRMAEATNIAAVTIHRLLGWNGVDGFQHNEDNPIQGKLLIIDEMSMVDIFLANQLFKALPDHIQVVLVGDED
QLPSVGPGQVLKDLIRSNIMETVKLTDIYRQAEGSTIIELAHKINQGNLPEDVLHPTSDRSFIECGADQMKEVVHKVVKN
AIHKGLSKKDIQVLAPMYKGPVGINQLNLMLQEMLNPPSNQKRELSFGEVVYRVGDKVLQLVNQPESNVFNGDMGFIVSI
FYSKENTEKEDLIVISFDGIEVTYTRKDFQQFTHAYCCSIHKAQGSEFPVVILPVLRSYYRMLKRNLIYTAITRSKKYLI
MCGELEVFKRGIQNGSEDIRQTSLVDRLLDIEKAPMSIELMQLQKELPFNVEDASVGMENISPFDFMDELG

Nucleotide


Download         Length: 2376 bp        

>NTDB_id=850516 LC087_RS08045 WP_306020583.1 1565538..1567913(-) (recD2) [Bacillus carboniphilus strain SaN35-3]
ATGAAAGAGGAGAATTATAATCAAGAATCATTTTTAACCGGGGAAGTTAAGTCGATAATCTTCAGAAATCAGGATAATTT
ATACTCAGTGTTAAAAATATTTGTTGAAGAATCGGATCAAACGTTAGATGAAGATATCATAACAGTAACTGGCTATTTCC
CTGTGCTACATGAAGATGATGTGTATACCTTTCATGGCTCCTTTATAAAACACCCTAAATTCGGTAATCAGTTTCAAGCT
AATCGATTTCAAAAGCAACAGCCACAGACGAAGAGTGGTATTATCCGTTATCTTTCAAGTGATTTATTTAAAGGGATTGG
TCCTAAGACAGCTGAATCTATAGTGGATGAATTGGGAAATCAAGCTATTTCACTCATTTTACAAGATCCATCAGTATTGG
GAAAAATAAAGAAGTTGTCCAAACAAAAAAGAATAGACTTAGTGGAAAGTCTGAAGGAACACCAAGGAATTGAGCAGATG
ATGATTCATCTCAATGAGTTTGGTTTTGGACCTCAGTTATCAACTAAAATTTACCAAAAGTATCGAGATGAAGCGATTGA
AATTATACAAACAAATCCGTATCGTTTAGTTGATGATATTAAAGGAATTGGTTTTGCTAGAGCAGATGAAATAGGTCAAT
ATTTTGGTTTGTCTGGCAATCATCCCGACAGAATAAATGCTGGAATTCTCTTCATCCTTGAACAAGAAACTTCGCAAGAA
GGCCACGCCTTTTTACAGATCGATCAATTAGGAGAAAAAGCAAGACAACTGCTAAATCATAATAGTAATATTTCTATCAA
TGAAATACATAATCAATTGAGTCTTCTTGAAGAGCAAAAGAAAATAATGAAAGATGATCAAAGGGTGTACCTTCCCTCCT
TATATTTCTCAGAAAAAGGTCTTTCCCGGGAAATTAAACGATTAATGAAACAAACAGAATATAAAGATTTATTCCCTGAA
TCTGAATTTTTAATGGCACTTGGTAACCTCGAAGAACGTTTGAACGTGGAATATGCTCCCCTTCAGAAAGACGGAATTCA
GCGAGCGTTACAATCACCTATCACTATTTTGACTGGAGGGCCAGGTACAGGAAAAACGACGGTGATAAAAGGGATTGTTG
AGTTATACAGTGAACTTCATGGGTGTTCATTAGATGATAAAGATTATAAGAAAAAAAATGAACCATTTCCTATTTTGTTA
GCTGCTCCAACAGGAAGAGCAGCAAAGAGAATGGCAGAAGCAACAAACATTGCAGCTGTTACCATTCACCGTCTTTTAGG
ATGGAATGGAGTGGATGGTTTTCAACATAATGAAGATAATCCGATCCAAGGAAAGCTATTAATTATTGATGAAATGTCAA
TGGTTGATATTTTTTTAGCGAATCAACTATTCAAAGCTCTTCCAGATCATATTCAAGTTGTCTTAGTGGGGGATGAGGAT
CAACTTCCTTCTGTTGGACCAGGGCAAGTTCTAAAAGATTTAATCCGTTCTAATATAATGGAAACGGTCAAATTAACAGA
TATTTACAGACAAGCAGAAGGCTCAACGATCATTGAGTTAGCACATAAGATCAATCAAGGTAATTTACCAGAAGATGTAT
TACATCCTACTTCAGATCGATCATTTATAGAGTGTGGTGCAGATCAAATGAAAGAAGTTGTTCATAAAGTGGTCAAAAAT
GCTATTCATAAGGGACTTTCAAAGAAAGATATCCAAGTGTTAGCGCCTATGTATAAAGGTCCTGTAGGGATAAATCAATT
AAACCTTATGCTTCAGGAGATGTTAAATCCTCCTTCTAATCAAAAAAGGGAGCTTTCATTTGGAGAAGTTGTCTATAGAG
TAGGGGATAAAGTACTTCAACTTGTTAATCAACCAGAAAGTAATGTATTTAATGGAGATATGGGGTTTATTGTTTCAATT
TTCTACTCAAAGGAAAACACGGAAAAAGAAGATCTGATCGTTATTTCATTTGATGGGATAGAAGTAACCTATACAAGAAA
AGATTTTCAACAGTTTACTCATGCTTATTGCTGTTCTATACATAAAGCTCAAGGTAGTGAATTTCCAGTTGTAATACTCC
CTGTTTTAAGAAGTTATTATCGTATGCTTAAACGAAACTTAATATATACTGCCATTACTCGTAGCAAAAAATATTTGATC
ATGTGTGGAGAACTGGAGGTTTTTAAAAGAGGGATTCAAAATGGCTCTGAAGATATTCGTCAAACCTCTTTAGTGGATAG
GCTTCTCGATATTGAAAAAGCCCCTATGTCTATAGAGTTAATGCAATTGCAAAAGGAATTACCTTTCAATGTTGAAGATG
CGAGTGTAGGGATGGAGAATATTAGCCCGTTTGATTTTATGGATGAATTGGGATAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(674-722)

AAA domain (AAA_30)

(338-547)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(587-654)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.196

99.368

0.608