Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LC087_RS05120 Genome accession   NZ_CP129013
Coordinates   1014605..1015384 (-) Length   259 a.a.
NCBI ID   WP_226538342.1    Uniprot ID   -
Organism   Bacillus carboniphilus strain SaN35-3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1009605..1020384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC087_RS05095 (LC087_05095) fliG 1009702..1010718 (-) 1017 WP_226538337.1 flagellar motor switch protein FliG -
  LC087_RS05100 (LC087_05100) fliF 1010732..1012334 (-) 1603 Protein_1005 flagellar basal-body MS-ring/collar protein FliF -
  LC087_RS05105 (LC087_05105) fliE 1012370..1012660 (-) 291 WP_226538339.1 flagellar hook-basal body complex protein FliE -
  LC087_RS05110 (LC087_05110) flgC 1013099..1013545 (-) 447 WP_226538340.1 flagellar basal body rod protein FlgC -
  LC087_RS05115 (LC087_05115) flgB 1013547..1013936 (-) 390 WP_226538341.1 flagellar basal body rod protein FlgB -
  LC087_RS05120 (LC087_05120) codY 1014605..1015384 (-) 780 WP_226538342.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LC087_RS05125 (LC087_05125) hslU 1015438..1016839 (-) 1402 Protein_1010 HslU--HslV peptidase ATPase subunit -
  LC087_RS05130 (LC087_05130) hslV 1016855..1017397 (-) 543 WP_226538344.1 ATP-dependent protease subunit HslV -
  LC087_RS05135 (LC087_05135) xerC 1017627..1018526 (-) 900 Protein_1012 tyrosine recombinase XerC -
  LC087_RS05140 (LC087_05140) trmFO 1018598..1019904 (-) 1307 Protein_1013 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29052.36 Da        Isoelectric Point: 4.8223

>NTDB_id=850508 LC087_RS05120 WP_226538342.1 1014605..1015384(-) (codY) [Bacillus carboniphilus strain SaN35-3]
MSLLDKTRKINAMLQNAAGKPVNFKEMAETLRDVIEANVFVVSRRGKLLGFAINQQIENDRMKKMLEDRQFPEEYTKNLF
NITSTSPNIDISSEYTAFPVENRELFESGLTTIVPIIGGGERIGTLILARVNDQFEDDDLILAEYGATVVGMEILHEKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGMEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLRELEKIKNH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=850508 LC087_RS05120 WP_226538342.1 1014605..1015384(-) (codY) [Bacillus carboniphilus strain SaN35-3]
ATGTCTTTACTAGATAAAACAAGAAAAATTAACGCAATGTTACAAAATGCAGCAGGAAAGCCAGTTAATTTTAAAGAAAT
GGCAGAAACCTTAAGGGATGTCATCGAAGCAAATGTATTTGTTGTTAGTAGAAGAGGAAAATTACTAGGATTTGCCATTA
ACCAGCAAATTGAAAACGATCGTATGAAAAAAATGCTTGAAGATCGTCAATTTCCTGAAGAATATACTAAAAACTTATTT
AACATTACCAGCACTTCCCCTAACATTGATATATCCAGTGAATATACAGCATTCCCTGTAGAAAATCGTGAACTTTTTGA
ATCGGGTTTGACTACAATTGTACCAATTATTGGTGGGGGAGAGAGAATAGGTACATTGATTTTGGCGCGCGTTAATGATC
AATTTGAAGATGATGATTTAATCTTAGCCGAATATGGTGCGACAGTCGTGGGAATGGAAATTTTACATGAAAAGGCAGAA
GAAATAGAAGAAGAAGCAAGAAGTAAAGCGGTTGTGCAAATGGCGATCAGTTCTCTTTCTTACAGTGAACTTGAGGCGAT
TGAACATATTTTCGAAGAATTAAATGGTATGGAAGGTTTACTAGTAGCTAGTAAAATTGCGGACAGAGTAGGAATAACTC
GGTCGGTTATCGTTAACGCTCTCCGTAAATTAGAGAGTGCGGGTGTTATTGAGTCGAGGTCATTAGGTATGAAAGGTACT
TACATTAAAGTATTGAACAACAAATTTTTACGTGAATTAGAAAAAATAAAAAATCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

88.031

100

0.88
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459