Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QVX78_RS08165 Genome accession   NZ_CP128992
Coordinates   1614918..1615697 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain ZLP-101     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1609918..1620697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QVX78_RS08145 (QVX78_08130) trmFO 1610605..1611912 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QVX78_RS08150 (QVX78_08135) xerC 1611982..1612899 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  QVX78_RS08155 (QVX78_08140) hslV 1612915..1613460 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  QVX78_RS08160 (QVX78_08145) hslU 1613477..1614880 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  QVX78_RS08165 (QVX78_08150) codY 1614918..1615697 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QVX78_RS08170 (QVX78_08155) flgB 1616051..1616440 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  QVX78_RS08175 (QVX78_08160) flgC 1616440..1616892 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  QVX78_RS08180 (QVX78_08165) fliE 1616903..1617223 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  QVX78_RS08185 (QVX78_08170) fliF 1617266..1618876 (+) 1611 WP_032874889.1 flagellar basal-body MS-ring/collar protein FliF -
  QVX78_RS08190 (QVX78_08175) fliG 1618889..1619905 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  QVX78_RS08195 (QVX78_08180) fliH 1619898..1620653 (+) 756 WP_032874891.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=850271 QVX78_RS08165 WP_003154263.1 1614918..1615697(+) (codY) [Bacillus velezensis strain ZLP-101]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=850271 QVX78_RS08165 WP_003154263.1 1614918..1615697(+) (codY) [Bacillus velezensis strain ZLP-101]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471